Browse Element(s) Details


Os.49497.1.S1_at

Description gb:AK106988.1
DB_XREF= gi:32992197
TID=Os.49497.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49497 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-120-A05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-120-A05, full insert sequence.
FL= gb:AK106988.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g1084011/11Transcription factor HBP-1b, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g10800NANA9+5895338..5896113hypothetical protein
LOC_Os09g10810OsAffx.18926.1.S1_x_at2/119+5897999..5899010retrotransposon, putative, centromere-specific
LOC_Os09g10810OsAffx.18926.1.S1_at2/119+5897999..5899010retrotransposon, putative, centromere-specific
LOC_Os09g10810Os.54774.1.S1_x_at1/119+5897999..5899010retrotransposon, putative, centromere-specific
LOC_Os09g10820Os.48600.1.A1_s_at11/119+5899690..5904364Oxidoreductase family, NAD-binding Rossmann fold containing protein, expressed
LOC_Os09g10820Os.49101.1.S1_at11/119+5899690..5904364Oxidoreductase family, NAD-binding Rossmann fold containing protein, expressed
LOC_Os09g10820Os.48600.1.A1_at8/119+5899690..5904364Oxidoreductase family, NAD-binding Rossmann fold containing protein, expressed
LOC_Os09g10830NANA9+5905970..5906501hypothetical protein
LOC_Os09g10840Os.49497.1.S1_at11/119+5917077..5928773Transcription factor HBP-1b, putative, expressed
LOC_Os09g10850Os.17448.1.S1_at10/119+5934114..5939552Mnd1 family protein, expressed
LOC_Os09g10860NANA9+5942545..5942847hypothetical protein
LOC_Os09g10870Os.6109.1.S1_at1/119+5953108..5957902retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
GO:0005634cellular_componentnucleus
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
GO:0016563molecular_functiontranscriptional activator activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49497.1.S1_at--171--8891Chr09:5928194..5928218 (25 bp)
TGAGGCAGCAGACCCTGCACAAGCT
LOC_Os09g10840
Os.49497.1.S1_at--186--1551Chr09:5928221..5928245 (25 bp)
AGCATATGCTGACCATCCGGCAAGC
LOC_Os09g10840
Os.49497.1.S1_at--792--1491Chr09:5928298..5928322 (25 bp)
AGCACACTATGGGTTGCGAGGCCAA
LOC_Os09g10840
Os.49497.1.S1_at--687--4811Chr09:5928486..5928510 (25 bp)
GCTCTCTCAGATGTGTAACTTGCAA
LOC_Os09g10840
Os.49497.1.S1_at--481--10351Chr09:5928601..5928625 (25 bp)
TTTATCCCTGACTTTTTCTACTTCT
LOC_Os09g10840
Os.49497.1.S1_at--323--2051Chr09:5928611..5928635 (25 bp)
ACTTTTTCTACTTCTTTGCCAGCTA
LOC_Os09g10840
Os.49497.1.S1_at--257--10691Chr09:5928626..5928650 (25 bp)
TTGCCAGCTATATGTAAGTTCACCT
LOC_Os09g10840
Os.49497.1.S1_at--643--6751Chr09:5928643..5928667 (25 bp)
GTTCACCTGGAACTACATCATTGAT
LOC_Os09g10840
Os.49497.1.S1_at--515--1111Chr09:5928674..5928698 (25 bp)
AGTGTTTCTAATACTTGCTGGTAAC
LOC_Os09g10840
Os.49497.1.S1_at--602--2391Chr09:5928733..5928757 (25 bp)
AAACTTCCAGAGTCTCATATCCCCT
LOC_Os09g10840
Os.49497.1.S1_at--76--251Chr09:5928749..5928773 (25 bp)
ATATCCCCTCTGAAATTTGTTCGCT
LOC_Os09g10840
Target Sequence 
TGAGGCAGCAGACCCTGCACAAGCTGCAGCATATGCTGACCATCCGGCAAGCCGCCCGGTGCTTCGTGGCAATCTCCGAC
TACTTCCACCGCCTACGCGCACTCAGCACACTATGGGTTGCGAGGCCAAGGCCGGAGGAGGGGCCGGCAATGTAGAATAA
GTGTCTCAGAGAAGATCAGAACATCAACAACAATGCTTGCAAAATTTAACCTGGTTAAGAATTAGGTAGTTAGCTGCATG
CAGTGAATTGAACTAGGGAGCACATTTGAAGAGAGGTGTATGTGAGAGTAATGCTCTCTCAGATGTGTAACTTGCAACTT
TGTAAGGTGTATATAGCTTCTTAGGTGTTAGAGAAGAAAAGAAGTAGGGAATAGTGGAAACTTAATTTGAACTTTCTTTT
GTTTCTTTTTATCCCTGACTTTTTCTACTTCTTTGCCAGCTATATGTAAGTTCACCTGGAACTACATCATTGATTTGGAT
AGTGTTTCTAATACTTGCTGGTAACAAAATCATGAGATAAATGCTCTAAGGGGAAAAAAAAACTTCCAGAGTCTCATATC
CCCTCTGAAATTTGTTCGCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49497.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis