Browse Element(s) Details


Os.48600.1.A1_at

Description gb:CR285624
DB_XREF= gi:44672190
DB_XREF=CR285624
CLONE=p810g06p3
TID=Os.48600.1
CNT=1
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.48600 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequences
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g108208/11Oxidoreductase family, NAD-binding Rossmann fold containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g10770Os.27814.1.S1_at11/119+5873972..5882020ATPase, histidine kinase, DNA gyrase B-, and HSP90-like domain containing protein, expressed
LOC_Os09g10780Os.55239.1.S1_at10/119+5882560..5883196expressed protein
LOC_Os09g10790Os.50255.1.S1_at3/119+5887125..5889572retrotransposon protein, putative, unclassified
LOC_Os09g10800NANA9+5895338..5896113hypothetical protein
LOC_Os09g10810OsAffx.18926.1.S1_x_at2/119+5897999..5899010retrotransposon, putative, centromere-specific
LOC_Os09g10810OsAffx.18926.1.S1_at2/119+5897999..5899010retrotransposon, putative, centromere-specific
LOC_Os09g10810Os.54774.1.S1_x_at1/119+5897999..5899010retrotransposon, putative, centromere-specific
LOC_Os09g10820Os.48600.1.A1_s_at11/119+5899690..5904364Oxidoreductase family, NAD-binding Rossmann fold containing protein, expressed
LOC_Os09g10820Os.49101.1.S1_at11/119+5899690..5904364Oxidoreductase family, NAD-binding Rossmann fold containing protein, expressed
LOC_Os09g10820Os.48600.1.A1_at8/119+5899690..5904364Oxidoreductase family, NAD-binding Rossmann fold containing protein, expressed
LOC_Os09g10830NANA9+5905970..5906501hypothetical protein
LOC_Os09g10840Os.49497.1.S1_at11/119+5917077..5928773Transcription factor HBP-1b, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006118biological_processelectron transport
GO:0008152biological_processmetabolism
GO:0016491molecular_functionoxidoreductase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.48600.1.A1_at--18--3591Chr08:8280378..8280402 (23 bp)
CATTTTCTCAGATCCAATTTATATT
NONE
Os.48600.1.A1_at--106--6771Chr09:5903917..5903941 (25 bp)
GTTAAATAATCAGCGCATCTTCTTT
LOC_Os09g10820
Os.48600.1.A1_at--972--3071Chr09:5903924..5903948 (25 bp)
AATCAGCGCATCTTCTTTGAATCCC
LOC_Os09g10820
Os.48600.1.A1_at--784--431Chr09:5903933..5903957 (25 bp)
ATCTTCTTTGAATCCCATCCGATTA
LOC_Os09g10820
Os.48600.1.A1_at--989--5251Chr09:5903942..5903966 (25 bp)
GAATCCCATCCGATTATTAAAATAT
LOC_Os09g10820
Os.48600.1.A1_at--452--2451Chr09:5903960..5903984 (25 bp)
AAAATATGATAGGATTTTGGTGCAC
LOC_Os09g10820
Os.48600.1.A1_at--373--10251Chr09:5903975..5903999 (25 bp)
TTTGGTGCACTCCTGCTGACTCGCT
LOC_Os09g10820
Os.48600.1.A1_at--868--9111Chr09:5903988..5904012 (25 bp)
TGCTGACTCGCTGTTACTGCTTGGT
LOC_Os09g10820
Os.48600.1.A1_at--200--9351Chr09:5903995..5904019 (25 bp)
TCGCTGTTACTGCTTGGTCGTGCAG
LOC_Os09g10820
Os.48600.1.A1_at--537--5491NONE
GAACATTTTTTCCAAGTTAATACAT
NONE
Os.48600.1.A1_at--802--10671NONE
TTCCAAGTTAATACATACCATTGAG
NONE
Target Sequence 
CATTTTCTCAGATCCAATTTATATTAAACCCCCCAAAATGTTAAATAATCAGCGCATCTTCTTTGAATCCCATCCGATTA
TTAAAATATGATAGGATTTTGGTGCACTCCTGCTGACTCGCTGTTACTGCTTGGTCGTGCAGGATGGGGATCACAAGGCT
GAACCCCGCAGTTCTTATGTTGAAGGCGCACGGGATGTCGCCGTTCTAGAAGCCATGCTTGAATCTAGTGCGAAGCAAGG
AACCATGGTCCAAGTGAAGAAATTCTAACATCCATAAAATTGTTCAAAAAAAGAGAGGGAAATGTATTCTTCAGCAAGTT
GGTACGCCAATTATGTAGCTTTACTAATAAGGAACATTTTTTCCAAGTTAATACATACCATTGAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.48600.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis