Browse Element(s) Details


Os.55239.1.S1_at

Description gb:AK107713.1
DB_XREF= gi:32992922
TID=Os.55239.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.55239 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-132-D12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-132-D12, full insert sequence.
FL= gb:AK107713.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g1078010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g10740OsAffx.6229.1.S1_at10/119+5862941..5864175Mitochondrial import inner membrane translocase subunit Tim17 family protein, expressed
LOC_Os09g10750Os.18520.1.S1_at11/119+5865482..5869645rhodanese-like domain-containing protein, putative, expressed
LOC_Os09g10760Os.8938.1.S1_at11/119+5869971..5872188Plastid-specific 30S ribosomal protein 2, chloroplast precursor, putative, expressed
LOC_Os09g10770Os.27814.1.S1_at11/119+5873972..5882020ATPase, histidine kinase, DNA gyrase B-, and HSP90-like domain containing protein, expressed
LOC_Os09g10780Os.55239.1.S1_at10/119+5882560..5883196expressed protein
LOC_Os09g10790Os.50255.1.S1_at3/119+5887125..5889572retrotransposon protein, putative, unclassified
LOC_Os09g10800NANA9+5895338..5896113hypothetical protein
LOC_Os09g10810OsAffx.18926.1.S1_x_at2/119+5897999..5899010retrotransposon, putative, centromere-specific
LOC_Os09g10810OsAffx.18926.1.S1_at2/119+5897999..5899010retrotransposon, putative, centromere-specific
LOC_Os09g10810Os.54774.1.S1_x_at1/119+5897999..5899010retrotransposon, putative, centromere-specific
LOC_Os09g10820Os.48600.1.A1_s_at11/119+5899690..5904364Oxidoreductase family, NAD-binding Rossmann fold containing protein, expressed
LOC_Os09g10820Os.49101.1.S1_at11/119+5899690..5904364Oxidoreductase family, NAD-binding Rossmann fold containing protein, expressed
LOC_Os09g10820Os.48600.1.A1_at8/119+5899690..5904364Oxidoreductase family, NAD-binding Rossmann fold containing protein, expressed
LOC_Os09g10830NANA9+5905970..5906501hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.55239.1.S1_at--473--4531Chr09:5882995..5883019 (25 bp)
GCCGCCATCCAATGTGTCTTTTGGT
LOC_Os09g10780
Os.55239.1.S1_at--270--2591Chr09:5882932..5882956 (25 bp)
AACGATGATGACAACGCAGCCACCT
LOC_Os09g10780
Os.55239.1.S1_at--232--8871Chr09:5882927..5882951 (25 bp)
TGATGACAACGCAGCCACCTTGGAG
LOC_Os09g10780
Os.55239.1.S1_at--441--2591Chr09:5882920..5882944 (25 bp)
AACGCAGCCACCTTGGAGGAGGACC
LOC_Os09g10780
Os.55239.1.S1_at--315--3831Chr09:5882704..5882728 (25 bp)
CTGCCGCTCGGCTCTCTGTGGTTGG
LOC_Os09g10780
Os.55239.1.S1_at--1118--7731Chr09:5882616..5882640 (25 bp)
GGTGGGACCCACTAAGCTTCTTGTA
LOC_Os09g10780
Os.55239.1.S1_at--601--8091Chr09:5882612..5882636 (25 bp)
GGACCCACTAAGCTTCTTGTATTGT
LOC_Os09g10780
Os.55239.1.S1_at--442--4891Chr09:5882601..5882625 (25 bp)
GCTTCTTGTATTGTGGTCTTGCGGA
LOC_Os09g10780
Os.55239.1.S1_at--252--8771Chr09:5882595..5882619 (25 bp)
TGTATTGTGGTCTTGCGGAGTTTGC
LOC_Os09g10780
Os.55239.1.S1_at--62--4691Chr09:5882581..5882605 (25 bp)
GCGGAGTTTGCATTATAGAACATCT
LOC_Os09g10780
Os.55239.1.S1_at--63--451Chr09:5882560..5882584 (25 bp)
ATCTAGCTAGTATTGTTCTTGGTCT
NONE
Target Sequence 
GCCGCCATCCAATGTGTCTTTTGGTGAGAGGGGCGCCGCATGGGGGAGAGGAGAGAGAGAGAAAACGATGATGACAACGC
AGCCACCTTGGAGGAGGACCGGGCCGACACCGGAGAGGGGAGCTCGAGGTCGATCCGCGCCGCCGCTTGGGCCACGTCAC
CGCCGCGTCGTTGGGGGTGGAGGAGAGGACGCCGGCGCTGCTCCGCTCGACCGCCGCCGCTCGAATCCTCCGACCGGCGC
CGTCGCCGTCGCCACCCCGCCACCGCTCCGCTTGGCGCCGGCGCCGTCGAGCTGCCGCTCGGCTCTCTGTGGTTGGAAAA
GGAAGAGAGGGAGAGAGAGAGGAGAGGAGAGGGGAAAGTGAAAAGAGAAAAGTGGTATTGGTGGGACCCACTAAGCTTCT
TGTATTGTGGTCTTGCGGAGTTTGCATTATAGAACATCTAGCTAGTATTGTTCTTGGTCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.55239.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis