Browse Element(s) Details


OsAffx.6229.1.S1_at

Description tigr:9637.m00834
TID=OsAffx.6229.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g1074010/11Mitochondrial import inner membrane translocase subunit Tim17 family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g10710Os.27173.1.A1_x_at11/119+5835661..5842899ENT domain containing protein, expressed
LOC_Os09g10710OsAffx.6228.1.S1_at11/119+5835661..5842899ENT domain containing protein, expressed
LOC_Os09g10720OsAffx.29798.1.S1_at11/119+5846666..5850281Protein kinase domain containing protein, expressed
LOC_Os09g10730Os.36687.1.A1_at11/119+5855235..5856151expressed protein
LOC_Os09g10740OsAffx.6229.1.S1_at10/119+5862941..5864175Mitochondrial import inner membrane translocase subunit Tim17 family protein, expressed
LOC_Os09g10750Os.18520.1.S1_at11/119+5865482..5869645rhodanese-like domain-containing protein, putative, expressed
LOC_Os09g10760Os.8938.1.S1_at11/119+5869971..5872188Plastid-specific 30S ribosomal protein 2, chloroplast precursor, putative, expressed
LOC_Os09g10770Os.27814.1.S1_at11/119+5873972..5882020ATPase, histidine kinase, DNA gyrase B-, and HSP90-like domain containing protein, expressed
LOC_Os09g10780Os.55239.1.S1_at10/119+5882560..5883196expressed protein
LOC_Os09g10790Os.50255.1.S1_at3/119+5887125..5889572retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0015031biological_processprotein transport
GO:0005739cellular_componentmitochondrion
GO:0005744cellular_componentmitochondrial inner membrane presequence translocase complex
GO:0015450molecular_functionprotein translocase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.6229.1.S1_at--974--5511Chr09:5862988..5863012 (25 bp)
GAAAACGGGCCAGGCTGCAGGCATT
LOC_Os09g10740
OsAffx.6229.1.S1_at--18--931Chr09:5863006..5863030 (25 bp)
AGGCATTGGTTTAGCTTCTGGCACT
LOC_Os09g10740
OsAffx.6229.1.S1_at--789--6671Chr09:5863046..5863070 (25 bp)
GTTGCTATGCATTTCAATGGACCTC
LOC_Os09g10740
OsAffx.6229.1.S1_at--599--831Chr09:5863062..5863086 (25 bp)
ATGGACCTCACGTTGGCAGTAATGT
LOC_Os09g10740
OsAffx.6229.1.S1_at--527--5171Chr09:5863136..5863160 (25 bp)
GCAAGCTTTGCACTTCTTGGAGCTA
LOC_Os09g10740
OsAffx.6229.1.S1_at--222--8271Chr09:5863169..5863193 (25 bp)
GGCATCGAGCAGTCCCTTGAAAATT
LOC_Os09g10740
OsAffx.6229.1.S1_at--433--6971Chr09:5863223..5863247 (25 bp)
GTAGCTGGTTTTACCGCTGGTGCAA
LOC_Os09g10740
OsAffx.6229.1.S1_at--117--8611Chr09:5863240..5863264 (25 bp)
TGGTGCAACTGTCCTGGGTTTCAGA
LOC_Os09g10740
OsAffx.6229.1.S1_at--468--7871NONE
GGTTTCAGAGCGAGGAGTCTCCCAA
NONE
OsAffx.6229.1.S1_at--1053--8691Chr09:5864086..5864110 (25 bp)
TGTGCGATCGCTTTGACTTCTGTAC
LOC_Os09g10740
OsAffx.6229.1.S1_at--614--5691Chr09:5864100..5864124 (25 bp)
GACTTCTGTACTGCTGGATGTGACT
LOC_Os09g10740
Target Sequence 
GAAAACGGGCCAGGCTGCAGGCATTGGTTTAGCTTCTGGCACTGTGTGGGGTGGGGTGGTTGCTATGCATTTCAATGGAC
CTCACGTTGGCAGTAATGTCAAGTATCCTGAACTGGTTAGAATTGGCAAGGTCTCTGGAAATTATGCAGCAAGCTTTGCA
CTTCTTGGAGCTACATATGTAGGCATCGAGCAGTCCCTTGAAAATTGCAGGAAGAAGGACTACATTAATGGTGCTGTAGC
TGGTTTTACCGCTGGTGCAACTGTCCTGGGTTTCAGAGCGAGGAGTCTCCCAACAGCTGTCCTCTCAGGCTGTGCGATCG
CTTTGACTTCTGTACTGCTGGATGTGACT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.6229.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis