Browse Element(s) Details


OsAffx.6228.1.S1_at

Description tigr:9637.m00831
TID=OsAffx.6228.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=ENT domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g1071011/11ENT domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g10660OsAffx.17637.1.S1_at11/119+5816870..5818446hypothetical protein
LOC_Os09g10670OsAffx.29796.1.S1_at11/119+5819495..5819982hypothetical protein
LOC_Os09g10680NANA9+5821784..5823771hypothetical protein
LOC_Os09g10690OsAffx.17638.1.S1_at11/119+5825195..5826019expressed protein
LOC_Os09g10700NANA9+5828396..5830641hypothetical protein
LOC_Os09g10710Os.27173.1.A1_x_at11/119+5835661..5842899ENT domain containing protein, expressed
LOC_Os09g10710OsAffx.6228.1.S1_at11/119+5835661..5842899ENT domain containing protein, expressed
LOC_Os09g10720OsAffx.29798.1.S1_at11/119+5846666..5850281Protein kinase domain containing protein, expressed
LOC_Os09g10730Os.36687.1.A1_at11/119+5855235..5856151expressed protein
LOC_Os09g10740OsAffx.6229.1.S1_at10/119+5862941..5864175Mitochondrial import inner membrane translocase subunit Tim17 family protein, expressed
LOC_Os09g10750Os.18520.1.S1_at11/119+5865482..5869645rhodanese-like domain-containing protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.6228.1.S1_at--952--5691Chr09:5836234..5836258 (25 bp)
GACTATAGTCTCTGATTTCTACAGC
LOC_Os09g10710
OsAffx.6228.1.S1_at--783--2431Chr09:5836208..5836232 (25 bp)
AAAATTTGTCCTCAGTTAGTTCATA
LOC_Os09g10710
OsAffx.6228.1.S1_at--623--231Chr09:5836186..5836210 (25 bp)
ATATATCGTCTTCAACCTGCAGGCT
LOC_Os09g10710
OsAffx.6228.1.S1_at--718--4731Chr09:5836164..5836188 (25 bp)
GCTGACCCCAGCTGAACTTATAGAT
LOC_Os09g10710
OsAffx.6228.1.S1_at--586--1351Chr09:5836085..5836109 (25 bp)
AGAGAACTGCTGTTGGCCTTTTGAA
LOC_Os09g10710
OsAffx.6228.1.S1_at--278--8731Chr09:5836005..5836029 (25 bp)
TGTCTTGGATTTTTCCAGATGCAAA
LOC_Os09g10710
OsAffx.6228.1.S1_at--615--8131Chr09:5835875..5835899 (25 bp)
GGACATTTTGACAGGGACACCACAA
LOC_Os09g10710
OsAffx.6228.1.S1_at--681--10191Chr09:5835846..5835870 (25 bp)
TATATGTCAACTACTCTCTCCATTC
LOC_Os09g10710
OsAffx.6228.1.S1_at--39--1552Chr10:17600615..17600634 (20 bp)
AGCATTTCTAGGACATTGATTCCAA
NONE
OsAffx.6228.1.S1_at--334--2352Chr09:5835773..5835797 (25 bp)
AAAGCATTTTCAACCAATCAAGGGA
LOC_Os09g10710
OsAffx.6228.1.S1_at--812--10651Chr09:5835699..5835723 (25 bp)
TTCCCTCAACCTTATCTTTGCTAAA
LOC_Os09g10710
Target Sequence 
GACTATAGTCTCTGATTTCTACAGCAAAAATTTGTCCTCAGTTAGTTCATATATCGTCTTCAACCTGCAGGCTGACCCCA
GCTGAACTTATAGATTGCTACTACAAGATGCAAGTAAAGGCGTAAAGCAATAATAGGCTTGAGCATTTCAGAGAACTGCT
GTTGGCCTTTTGAAGTTCGATGCACATGATTTTTTTTAAAACTCATTTTGGATGAAATTCTACAAAACTTGTCTTGGATT
TTTCCAGATGCAAAGGAAATCCAACAGGTTTAAAATAAATATGGAATTACCATTAAATGTCTATAAACTGAGATTATTAA
GAAGTCATTTTTCTAAACAGTAAACAATAAACTGGAGCAGGACATTTTGACAGGGACACCACAAAGATTATATGTCAACT
ACTCTCTCCATTCCAAAAATACAAGCATTTCTAGGACATTGATTCCAATGCATGGAAATCCAAAGCATTTTCAACCAATC
AAGGGAACCTAAGCAATTCAAAATTCAAAATTTGACCAATGATGTGACTCCTTTTTTCCCTCAACCTTATCTTTGCTAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.6228.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis