Browse Element(s) Details


OsAffx.29798.1.S1_at

Description tigr:9637.m00832
TID=OsAffx.29798.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=serinethreonine protein kinase, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g1072011/11Protein kinase domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g10680NANA9+5821784..5823771hypothetical protein
LOC_Os09g10690OsAffx.17638.1.S1_at11/119+5825195..5826019expressed protein
LOC_Os09g10700NANA9+5828396..5830641hypothetical protein
LOC_Os09g10710Os.27173.1.A1_x_at11/119+5835661..5842899ENT domain containing protein, expressed
LOC_Os09g10710OsAffx.6228.1.S1_at11/119+5835661..5842899ENT domain containing protein, expressed
LOC_Os09g10720OsAffx.29798.1.S1_at11/119+5846666..5850281Protein kinase domain containing protein, expressed
LOC_Os09g10730Os.36687.1.A1_at11/119+5855235..5856151expressed protein
LOC_Os09g10740OsAffx.6229.1.S1_at10/119+5862941..5864175Mitochondrial import inner membrane translocase subunit Tim17 family protein, expressed
LOC_Os09g10750Os.18520.1.S1_at11/119+5865482..5869645rhodanese-like domain-containing protein, putative, expressed
LOC_Os09g10760Os.8938.1.S1_at11/119+5869971..5872188Plastid-specific 30S ribosomal protein 2, chloroplast precursor, putative, expressed
LOC_Os09g10770Os.27814.1.S1_at11/119+5873972..5882020ATPase, histidine kinase, DNA gyrase B-, and HSP90-like domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0004672molecular_functionprotein kinase activity
GO:0005524molecular_functionATP binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29798.1.S1_at--846--2211Chr09:5847735..5847759 (25 bp)
AAATTCGAAGGCTGAACTCTCCCCA
LOC_Os09g10720
OsAffx.29798.1.S1_at--1069--2651Chr09:5847456..5847726 (25 bp)
AAGCCTTGATACTCCGCCAAGAGAG
LOC_Os09g10720
OsAffx.29798.1.S1_at--823--6531Chr09:5847429..5847453 (25 bp)
GATTGAAGGTACTCCTCCAGAACTC
LOC_Os09g10720
OsAffx.29798.1.S1_at--1115--9211Chr09:5847414..5847438 (25 bp)
TCCAGAACTCCGTCAAGGTCTATTT
LOC_Os09g10720
OsAffx.29798.1.S1_at--795--7791Chr09:5847398..5847422 (25 bp)
GGTCTATTTACATCAAGCCCAGGGA
LOC_Os09g10720
OsAffx.29798.1.S1_at--149--5431Chr09:5847357..5847381 (25 bp)
GAAGCCATGGTCAGCTTTTCCTGAA
LOC_Os09g10720
OsAffx.29798.1.S1_at--766--7371Chr09:5847311..5847335 (25 bp)
GTGACTGTGAAAGGTGCCCACCCAA
LOC_Os09g10720
OsAffx.29798.1.S1_at--1157--6351Chr09:5847209..5847233 (25 bp)
GATCCATTTGCCTTCGGTCAAGATA
LOC_Os09g10720
OsAffx.29798.1.S1_at--240--5931Chr09:5847163..5847187 (25 bp)
GAGCACTACCTTCCAAGATGTCAAA
LOC_Os09g10720
OsAffx.29798.1.S1_at--726--2971Chr09:5847131..5847155 (25 bp)
AATGGTTCCCAGTCTTCCAAGATGT
LOC_Os09g10720
OsAffx.29798.1.S1_at--145--7071Chr09:5847097..5847121 (25 bp)
GTAATGGTTCTCAGTCTCTCAATGC
LOC_Os09g10720
Target Sequence 
AAATTCGAAGGCTGAACTCTCCCCACCAAGTACAAGCCTTGATACTCCGCCAAGAGAGAAGATTGAAGGTACTCCTCCAG
AACTCCGTCAAGGTCTATTTACATCAAGCCCAGGGACACCGAGCCCTGATCCGAAGCCATGGTCAGCTTTTCCTGAAGAG
CCAAAAGCTCAAGCAGCTGTGACTGTGAAAGGTGCCCACCCAAGGTCAGTTCGCACTCTGCGGGCATCAAACAGCAACAA
AGCCAGCTCCCTTGGACAGTCAAACACAAGCTCTAGTGCTGATCCATTTGCCTTCGGTCAAGATAGCTTTAAGGCTGCTC
CTTCTCGAGCACTACCTTCCAAGATGTCAAATTTAGGGAATGGTTCCCAGTCTTCCAAGATGTCAAATTTGGGTAATGGT
TCTCAGTCTCTCAATGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29798.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis