Browse Element(s) Details


Os.8938.1.S1_at

Description gb:AK062461.1
DB_XREF= gi:32972479
TID=Os.8938.1
CNT=14
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.8938 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-038-A04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-103-D08, full insert sequence.
FL= gb:AK067492.1 gb:AK104715.1 gb:AK062461.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g1076011/11Plastid-specific 30S ribosomal protein 2, chloroplast precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g10720OsAffx.29798.1.S1_at11/119+5846666..5850281Protein kinase domain containing protein, expressed
LOC_Os09g10730Os.36687.1.A1_at11/119+5855235..5856151expressed protein
LOC_Os09g10740OsAffx.6229.1.S1_at10/119+5862941..5864175Mitochondrial import inner membrane translocase subunit Tim17 family protein, expressed
LOC_Os09g10750Os.18520.1.S1_at11/119+5865482..5869645rhodanese-like domain-containing protein, putative, expressed
LOC_Os09g10760Os.8938.1.S1_at11/119+5869971..5872188Plastid-specific 30S ribosomal protein 2, chloroplast precursor, putative, expressed
LOC_Os09g10770Os.27814.1.S1_at11/119+5873972..5882020ATPase, histidine kinase, DNA gyrase B-, and HSP90-like domain containing protein, expressed
LOC_Os09g10780Os.55239.1.S1_at10/119+5882560..5883196expressed protein
LOC_Os09g10790Os.50255.1.S1_at3/119+5887125..5889572retrotransposon protein, putative, unclassified
LOC_Os09g10800NANA9+5895338..5896113hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0009507cellular_componentchloroplast
GO:0003723molecular_functionRNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8938.1.S1_at--493--5431Chr09:5871099..5871123 (25 bp)
GAACCAGAGCCTGTATTTGTGGACA
LOC_Os09g10760
Os.8938.1.S1_at--281--5891Chr09:5871040..5871064 (25 bp)
GAGCGTGACCACAGAGATGCTTAAA
LOC_Os09g10760
Os.8938.1.S1_at--935--6331Chr09:5871025..5871049 (25 bp)
GATGCTTAAAAACTTCTTCTCTGAA
LOC_Os09g10760
Os.8938.1.S1_at--689--1331Chr09:5870995..5871019 (25 bp)
AGAGGTTCTCAGTGCCACCGTGTCC
LOC_Os09g10760
Os.8938.1.S1_at--186--7451Chr09:5870976..5871000 (25 bp)
GTGTCCCGGATTCCAGGAACTGCAA
LOC_Os09g10760
Os.8938.1.S1_at--119--3451Chr09:5870898..5870921 (24 bp)
CAGTTTCTACTTTCAACAATGCGGA
LOC_Os09g10760
Os.8938.1.S1_at--834--5291Chr09:5870306..5870330 (25 bp)
GAAGGACAACCCATCCGTGTGAATA
LOC_Os09g10760
Os.8938.1.S1_at--21--8291Chr09:5870274..5870298 (25 bp)
GGCATCTAGCAGATATTTCCAGACT
LOC_Os09g10760
Os.8938.1.S1_at--1045--8491Chr09:5870243..5870267 (25 bp)
TGGCAAAGTGGGTACCTCTGAGGCT
LOC_Os09g10760
Os.8938.1.S1_at--818--1371Chr09:5870150..5870174 (25 bp)
AGACCTTCCAATGCAATTTCACTTT
LOC_Os09g10760
Os.8938.1.S1_at--425--8211Chr09:5869986..5870010 (25 bp)
GGAATGTATACTTGGCAGTCATCTC
LOC_Os09g10760
Target Sequence 
GAACCAGAGCCTGTATTTGTGGACAGTCAGTACAAGGTTTACGTTGGTAATCTTGCAAAGAGCGTGACCACAGAGATGCT
TAAAAACTTCTTCTCTGAAAAGGGAGAGGTTCTCAGTGCCACCGTGTCCCGGATTCCAGGAACTGCAAAGTCCAAGGGAT
ATGGTTTTGTCACCTTTTCTTCAGAGGAAGAAGTTNAGGCTGCAGTTTCTACTTTCAACAATGCGGAATTGGAAGGACAA
CCCATCCGTGTGAATAAAGCATAGGCATCTAGCAGATATTTCCAGACTGGTTGATGGCAAAGTGGGTACCTCTGAGGCTG
AAGTAACTTTGTGAACACCTGTAGACTGAGGGAAACTTTAAGGCTAGATATTTGCAACAAAGTGGAAAGACCTTCCAATG
CAATTTCACTTTGCAACTAAACAAATTTTGTACGATAACAGCATATGTGAAGAAATTTTATTGGTGTTCATATGAAGCAT
ATATTATTTACCNCCGTACCAGCATGTTTTTTTGTTTAATTAGTTGTGTAACATATTTGTTCAGTTGGATTGGAATGTAT
ACTTGGCAGTCATCTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8938.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis