Browse Element(s) Details


Os.36687.1.A1_at

Description gb:AK062883.1
DB_XREF= gi:32972901
TID=Os.36687.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.36687 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-108-D07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-108-D07, full insert sequence.
FL= gb:AK062883.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g1073011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g10700NANA9+5828396..5830641hypothetical protein
LOC_Os09g10710Os.27173.1.A1_x_at11/119+5835661..5842899ENT domain containing protein, expressed
LOC_Os09g10710OsAffx.6228.1.S1_at11/119+5835661..5842899ENT domain containing protein, expressed
LOC_Os09g10720OsAffx.29798.1.S1_at11/119+5846666..5850281Protein kinase domain containing protein, expressed
LOC_Os09g10730Os.36687.1.A1_at11/119+5855235..5856151expressed protein
LOC_Os09g10740OsAffx.6229.1.S1_at10/119+5862941..5864175Mitochondrial import inner membrane translocase subunit Tim17 family protein, expressed
LOC_Os09g10750Os.18520.1.S1_at11/119+5865482..5869645rhodanese-like domain-containing protein, putative, expressed
LOC_Os09g10760Os.8938.1.S1_at11/119+5869971..5872188Plastid-specific 30S ribosomal protein 2, chloroplast precursor, putative, expressed
LOC_Os09g10770Os.27814.1.S1_at11/119+5873972..5882020ATPase, histidine kinase, DNA gyrase B-, and HSP90-like domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.36687.1.A1_at--1004--8451Chr09:5855787..5855811 (25 bp)
TGGCCTACTACGACTCGTCGTGGAA
LOC_Os09g10730
Os.36687.1.A1_at--1110--8151Chr09:5855766..5855790 (25 bp)
GGAACACCATGATCCCCGCGGAGGA
LOC_Os09g10730
Os.36687.1.A1_at--914--5651Chr09:5855638..5855662 (25 bp)
GACAGGCTCGCAGACAAGTTCATAG
LOC_Os09g10730
Os.36687.1.A1_at--304--4711Chr09:5855582..5855606 (25 bp)
GCAGGAGTCCTACAGGAGGTTCCAT
LOC_Os09g10730
Os.36687.1.A1_at--852--6151Chr09:5855567..5855591 (25 bp)
GAGGTTCCATGAGATGCTAGCCAGG
LOC_Os09g10730
Os.36687.1.A1_at--604--9991Chr09:5855550..5855574 (25 bp)
TAGCCAGGAGCTTGTAGGCACAGCT
LOC_Os09g10730
Os.36687.1.A1_at--525--2771Chr09:5855416..5855440 (25 bp)
AAGAGCTCATGAATTCAGTGGTTGC
LOC_Os09g10730
Os.36687.1.A1_at--409--9731Chr09:5855359..5855383 (25 bp)
TAATTTAATTTCCTCCCCTGAAGAG
LOC_Os09g10730
Os.36687.1.A1_at--641--5351Chr09:5855340..5855364 (25 bp)
GAAGAGTCCTTGTTTTTGTTCACTT
LOC_Os09g10730
Os.36687.1.A1_at--450--2891Chr09:5855292..5855316 (25 bp)
AAGGGTTCTTCTTAGTCCATGAATG
LOC_Os09g10730
Os.36687.1.A1_at--436--10371Chr09:5855254..5855278 (25 bp)
TTTTTTCTCTCCCAGGAATTAGCTA
LOC_Os09g10730
Target Sequence 
TGGCCTACTACGACTCGTCGTGGAACACCATGATCCCCGCGGAGGAGCAGCTGCTGCGGCCGATCACCGGCTACCTCAGC
TGGCCTGAGCAGGAGGCCGAGGAAGACGACGATCAGGGTGAGGAGGAGGAGGATGAGAAGAACGAGATCGACAGGCTCGC
AGACAAGTTCATAGAAAGGTGCCATGAGAGGTTTATTCTGGAAAAGCAGGAGTCCTACAGGAGGTTCCATGAGATGCTAG
CCAGGAGCTTGTAGGCACAGCTCGATCAGATTAATTCTTTTGGTGGTTTAATTTGATTTTGATTAGTGATTAATTCTTTT
GTTCACATTTTGTTCATGTGGGAGTAGCTAATTAGTCATGGTTTAACTTGTAAGAGCTCATGAATTCAGTGGTTGCTGGT
GGAGATCGATCACTGATCACTAGGATTTTAATTTAATTTCCTCCCCTGAAGAGTCCTTGTTTTTGTTCACTTTCTTGGTT
TTTAAGTTCAGGATTAAGGGTTCTTCTTAGTCCATGAATGTTCATGTAACTTTTTTTTTCTCTCCCAGGAATTAGCTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.36687.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis