Browse Element(s) Details


Os.27814.1.S1_at

Description gb:AY371050.1
DB_XREF= gi:34558724
TID=Os.27814.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.27814 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) topoisomerase 6 subunit B-like protein mRNA, complete cds.
PROD=topoisomerase 6 subunit B-like protein
FL= gb:AK101452.1 gb:AY371050.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g1077011/11ATPase, histidine kinase, DNA gyrase B-, and HSP90-like domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g10720OsAffx.29798.1.S1_at11/119+5846666..5850281Protein kinase domain containing protein, expressed
LOC_Os09g10730Os.36687.1.A1_at11/119+5855235..5856151expressed protein
LOC_Os09g10740OsAffx.6229.1.S1_at10/119+5862941..5864175Mitochondrial import inner membrane translocase subunit Tim17 family protein, expressed
LOC_Os09g10750Os.18520.1.S1_at11/119+5865482..5869645rhodanese-like domain-containing protein, putative, expressed
LOC_Os09g10760Os.8938.1.S1_at11/119+5869971..5872188Plastid-specific 30S ribosomal protein 2, chloroplast precursor, putative, expressed
LOC_Os09g10770Os.27814.1.S1_at11/119+5873972..5882020ATPase, histidine kinase, DNA gyrase B-, and HSP90-like domain containing protein, expressed
LOC_Os09g10780Os.55239.1.S1_at10/119+5882560..5883196expressed protein
LOC_Os09g10790Os.50255.1.S1_at3/119+5887125..5889572retrotransposon protein, putative, unclassified
LOC_Os09g10800NANA9+5895338..5896113hypothetical protein
LOC_Os09g10810OsAffx.18926.1.S1_x_at2/119+5897999..5899010retrotransposon, putative, centromere-specific
LOC_Os09g10810OsAffx.18926.1.S1_at2/119+5897999..5899010retrotransposon, putative, centromere-specific
LOC_Os09g10810Os.54774.1.S1_x_at1/119+5897999..5899010retrotransposon, putative, centromere-specific
LOC_Os09g10820Os.48600.1.A1_s_at11/119+5899690..5904364Oxidoreductase family, NAD-binding Rossmann fold containing protein, expressed
LOC_Os09g10820Os.49101.1.S1_at11/119+5899690..5904364Oxidoreductase family, NAD-binding Rossmann fold containing protein, expressed
LOC_Os09g10820Os.48600.1.A1_at8/119+5899690..5904364Oxidoreductase family, NAD-binding Rossmann fold containing protein, expressed
LOC_Os09g10830NANA9+5905970..5906501hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0009741biological_processresponse to brassinosteroid stimulus
GO:0042023biological_processDNA endoreduplication
GO:0009330cellular_componentDNA topoisomerase complex (ATP-hydrolyzing)
GO:0003918molecular_functionDNA topoisomerase (ATP-hydrolyzing) activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27814.1.S1_at--96--391Chr09:5881128..5881152 (25 bp)
ATGACCTTTAGGGATTGCTTAACAC
LOC_Os09g10770
Os.27814.1.S1_at--917--6171Chr09:5881581..5881605 (25 bp)
GAGGAACCTCGTGAAGCATTATATT
LOC_Os09g10770
Os.27814.1.S1_at--57--2211Chr09:5881627..5881651 (25 bp)
ACAAGTTTATCGATTTCCAGAGCCC
LOC_Os09g10770
Os.27814.1.S1_at--580--191Chr09:5881639..5881663 (25 bp)
ATTTCCAGAGCCCTGTTTTTGTGTT
LOC_Os09g10770
Os.27814.1.S1_at--976--6531Chr09:5881666..5881690 (25 bp)
GATTTATTCCTTGAGAGTGCAACTT
LOC_Os09g10770
Os.27814.1.S1_at--61--1131Chr09:5881681..5881705 (25 bp)
AGTGCAACTTGCATGTCCATCTGTT
LOC_Os09g10770
Os.27814.1.S1_at--701--3511Chr09:5881692..5881716 (25 bp)
CATGTCCATCTGTTGCTAGGTTGAT
LOC_Os09g10770
Os.27814.1.S1_at--1087--10331Chr09:5881722..5881746 (25 bp)
TTTACTTCCCATAATCCCATTGTAC
LOC_Os09g10770
Os.27814.1.S1_at--20--7011Chr09:5881743..5881767 (25 bp)
GTACTGCGGATGTTTTATGAACCTT
LOC_Os09g10770
Os.27814.1.S1_at--7--10111Chr09:5881758..5881782 (25 bp)
TATGAACCTTTTGCCGATTCAGCAG
LOC_Os09g10770
Os.27814.1.S1_at--152--6571Chr09:5881773..5881797 (25 bp)
GATTCAGCAGTCATGACCGCAAGTT
LOC_Os09g10770
Target Sequence 
ATGACCTTTAGGGATTGCTTAACACAACATGTTGAACAGGTTGATTATGAAATGGCATTGGAGTACGCCATGCAGAGTGG
AGTAAGCGAGGAACCTCGTGAAGCATTATATTTAAACTCCCTTGAAGGATCTTACAAGTTTATCGATTTCCAGAGCCCTG
TTTTTGTGTTCAGATTTATTCCTTGAGAGTGCAACTTGCATGTCCATCTGTTGCTAGGTTGATTAATATTTACTTCCCAT
AATCCCATTGTACTGCGGATGTTTTATGAACCTTTTGCCGATTCAGCAGTCATGACCGCAAGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27814.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis