Browse Element(s) Details


Os.49101.1.S1_at

Description gb:AK073346.1
DB_XREF= gi:32983369
TID=Os.49101.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.49101 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033030J06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033030J06, full insert sequence.
FL= gb:AK073346.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g1082011/11Oxidoreductase family, NAD-binding Rossmann fold containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g10770Os.27814.1.S1_at11/119+5873972..5882020ATPase, histidine kinase, DNA gyrase B-, and HSP90-like domain containing protein, expressed
LOC_Os09g10780Os.55239.1.S1_at10/119+5882560..5883196expressed protein
LOC_Os09g10790Os.50255.1.S1_at3/119+5887125..5889572retrotransposon protein, putative, unclassified
LOC_Os09g10800NANA9+5895338..5896113hypothetical protein
LOC_Os09g10810OsAffx.18926.1.S1_x_at2/119+5897999..5899010retrotransposon, putative, centromere-specific
LOC_Os09g10810OsAffx.18926.1.S1_at2/119+5897999..5899010retrotransposon, putative, centromere-specific
LOC_Os09g10810Os.54774.1.S1_x_at1/119+5897999..5899010retrotransposon, putative, centromere-specific
LOC_Os09g10820Os.48600.1.A1_s_at11/119+5899690..5904364Oxidoreductase family, NAD-binding Rossmann fold containing protein, expressed
LOC_Os09g10820Os.49101.1.S1_at11/119+5899690..5904364Oxidoreductase family, NAD-binding Rossmann fold containing protein, expressed
LOC_Os09g10820Os.48600.1.A1_at8/119+5899690..5904364Oxidoreductase family, NAD-binding Rossmann fold containing protein, expressed
LOC_Os09g10830NANA9+5905970..5906501hypothetical protein
LOC_Os09g10840Os.49497.1.S1_at11/119+5917077..5928773Transcription factor HBP-1b, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006118biological_processelectron transport
GO:0008152biological_processmetabolism
GO:0016491molecular_functionoxidoreductase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49101.1.S1_at--538--10291Chr09:5903099..5903120 (22 bp)
TTTCCAGCTAGAAAATGGATGCGCT
LOC_Os09g10820
Os.49101.1.S1_at--439--10831Chr09:5903128..5903152 (25 bp)
TTGTGTTTGCAGTCAACTCGAGAAC
LOC_Os09g10820
Os.49101.1.S1_at--551--9691Chr09:5903140..5903174 (25 bp)
TCAACTCGAGAACACCCAAGATATT
LOC_Os09g10820
Os.49101.1.S1_at--357--231Chr09:5903291..5903315 (25 bp)
ATATTATGGCGGGTGGATGGAACTA
LOC_Os09g10820
Os.49101.1.S1_at--40--10011Chr09:5903331..5903355 (25 bp)
TAGAACGTGGAATTGCTAGTGGGAA
LOC_Os09g10820
Os.49101.1.S1_at--365--7611Chr09:5903351..5903401 (25 bp)
GGGAAGCATGGGTACCAGGTTTTAT
LOC_Os09g10820
Os.49101.1.S1_at--402--7691Chr09:5903360..5903537 (25 bp)
GGGTACCAGGTTTTATTCACCAATG
LOC_Os09g10820
Os.49101.1.S1_at--139--2091Chr09:5903558..5903582 (25 bp)
ACATTTTATCCATTCTGTGGCGTGA
LOC_Os09g10820
Os.49101.1.S1_at--1116--4651Chr09:5903577..5903601 (25 bp)
GCGTGAATGAAGAACTGAAGGCTTT
LOC_Os09g10820
Os.49101.1.S1_at--504--2931Chr09:5903594..5903618 (25 bp)
AAGGCTTTTGTTCATGACATTGTGC
LOC_Os09g10820
Os.49101.1.S1_at--405--6751Chr09:5903603..5903627 (25 bp)
GTTCATGACATTGTGCAGGCAAACA
LOC_Os09g10820
Target Sequence 
TTTCCAGCTAGAAAATGGATGCGCTGGGGTCTTTGTGTTTGCAGTCAACTCGAGAACACCCAAGATATTATGGCGGGTGG
ATGGAACTAGAGGANCAGTGCAAATAGAACGTGGAATTGCTAGTGGGAAGCATGGGTACCAGGTTTTATTCACCAATGAA
AATGGNCAGTGCCAGACNACATTTTATCCATTCTGTGGCGTGAATGAAGAACTGAAGGCTTTTGTTCATGACATTGTGCA
GGCAAACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49101.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis