Browse Element(s) Details


Os.18520.1.S1_at

Description gb:AK067071.1
DB_XREF= gi:32977089
TID=Os.18520.1
CNT=33
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.18520 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013091I09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013091I09, full insert sequence.
FL= gb:AK067071.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g1075011/11rhodanese-like domain-containing protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g10710Os.27173.1.A1_x_at11/119+5835661..5842899ENT domain containing protein, expressed
LOC_Os09g10710OsAffx.6228.1.S1_at11/119+5835661..5842899ENT domain containing protein, expressed
LOC_Os09g10720OsAffx.29798.1.S1_at11/119+5846666..5850281Protein kinase domain containing protein, expressed
LOC_Os09g10730Os.36687.1.A1_at11/119+5855235..5856151expressed protein
LOC_Os09g10740OsAffx.6229.1.S1_at10/119+5862941..5864175Mitochondrial import inner membrane translocase subunit Tim17 family protein, expressed
LOC_Os09g10750Os.18520.1.S1_at11/119+5865482..5869645rhodanese-like domain-containing protein, putative, expressed
LOC_Os09g10760Os.8938.1.S1_at11/119+5869971..5872188Plastid-specific 30S ribosomal protein 2, chloroplast precursor, putative, expressed
LOC_Os09g10770Os.27814.1.S1_at11/119+5873972..5882020ATPase, histidine kinase, DNA gyrase B-, and HSP90-like domain containing protein, expressed
LOC_Os09g10780Os.55239.1.S1_at10/119+5882560..5883196expressed protein
LOC_Os09g10790Os.50255.1.S1_at3/119+5887125..5889572retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.18520.1.S1_at--565--8151Chr09:5868439..5868463 (25 bp)
GGAAGATTTCCGCTGTTCTTGGAAC
LOC_Os09g10750
Os.18520.1.S1_at--107--5471Chr09:5868460..5868563 (25 bp)
GAACTGTGTTGATAAGTGCCTACCT
LOC_Os09g10750
Os.18520.1.S1_at--959--1131Chr09:5868554..5868577 (24 bp)
AGTGCCTACCTTTTCATCACATTGT
LOC_Os09g10750
Os.18520.1.S1_at--818--2071Chr09:5868571..5868595 (25 bp)
ACATTGTTCCCTGACCAGGCTGAAA
LOC_Os09g10750
Os.18520.1.S1_at--810--2351Chr09:5868594..5868618 (25 bp)
AAAGCTTTTTGACTTGGCTGGAATC
LOC_Os09g10750
Os.18520.1.S1_at--726--3411Chr09:5868629..5868653 (25 bp)
CAGAATTGTATCTCTTTTCATGCAT
LOC_Os09g10750
Os.18520.1.S1_at--14--6571Chr09:5868672..5868694 (23 bp)
GATTCATGTTCCCATTGCAAGGTTA
LOC_Os09g10750
Os.18520.1.S1_at--123--2091Chr09:5869375..5869399 (25 bp)
ACATTATTTTGCTCGCATGCATCCT
LOC_Os09g10750
Os.18520.1.S1_at--392--571Chr09:5869395..5869419 (25 bp)
ATCCTCTCCTTTTCCAATTGTATGT
LOC_Os09g10750
Os.18520.1.S1_at--23--2251Chr09:5869453..5869477 (25 bp)
AAATTAGGCCCTTGCAGAGTAATGG
LOC_Os09g10750
Os.18520.1.S1_at--814--7071Chr09:5869579..5869603 (25 bp)
GTAATTGTACCTTTATGCGTGTGAT
LOC_Os09g10750
Target Sequence 
GGAAGATTTCCGCTGTTCTTGGAACTGTGTTGATAAGTGCCTACCTTTTCATCACATTGTTCCCTGACCAGGCTGAAAAG
CTTTTTGACTTGGCTGGAATCAAATTGTGATCAGAATTGTATCTCTTTTCATGCATTTTGGTNCTCCTCTTGGGGATTCA
TGTTCCCATTGCAAGGTTAACTTAGGCGGACTTGGGGAGATCTTTTCATGATGAAAAGAAAGTTAGGCTCAGTGTGTAAT
ATGTAGGGAATTGTTGGCATATCCAAATGTATTTCCTCTTGAATACATTATTTTGCTCGCATGCATCCTCTCCTTTTCCA
ATTGTATGTTTGGTTTATCGAATTTTTGTTGTTCCGACAAAAAAATTAGGCCCTTGCAGAGTAATGGTTCAGGATTTCAA
GCTGAGCACAGAATAGAAAGTTTAACAAAAAAAANAAAGTGTAGTCTGTAGATTGTAATACCAATAACATCTGAAAACCA
CAAGCTATGTAATTGTACCTTTATGCGTGTGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.18520.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis