Browse Element(s) Details


OsAffx.17638.1.S1_at

Description tigr:9637.m00829
TID=OsAffx.17638.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g1069011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g10650NANA9+5799256..5805941Phosphatidylinositol-4-phosphate 5-Kinase family protein
LOC_Os09g10660OsAffx.17637.1.S1_at11/119+5816870..5818446hypothetical protein
LOC_Os09g10670OsAffx.29796.1.S1_at11/119+5819495..5819982hypothetical protein
LOC_Os09g10680NANA9+5821784..5823771hypothetical protein
LOC_Os09g10690OsAffx.17638.1.S1_at11/119+5825195..5826019expressed protein
LOC_Os09g10700NANA9+5828396..5830641hypothetical protein
LOC_Os09g10710Os.27173.1.A1_x_at11/119+5835661..5842899ENT domain containing protein, expressed
LOC_Os09g10710OsAffx.6228.1.S1_at11/119+5835661..5842899ENT domain containing protein, expressed
LOC_Os09g10720OsAffx.29798.1.S1_at11/119+5846666..5850281Protein kinase domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.17638.1.S1_at--993--7271Chr09:5825549..5825573 (25 bp)
GTGCGCAAGCGGTTCGACTCCGCCG
LOC_Os09g10690
OsAffx.17638.1.S1_at--382--911Chr09:5825581..5825605 (25 bp)
AGGCGGAGGTGGCTCAGGTTCTTCG
LOC_Os09g10690
OsAffx.17638.1.S1_at--1072--7531Chr09:5825589..5825613 (25 bp)
GTGGCTCAGGTTCTTCGGCTTCGGC
LOC_Os09g10690
OsAffx.17638.1.S1_at--71--1052Chr09:5825622..5825646 (25 bp)
AGGTGACGATGAGGAGCGCCATCCC
LOC_Os09g10690
OsAffx.17638.1.S1_at--71--8952Chr09:5825625..5825649 (25 bp)
TGACGATGAGGAGCGCCATCCCGGT
LOC_Os09g10690
OsAffx.17638.1.S1_at--402--8371Chr09:5825684..5825708 (25 bp)
GGCGTGAGGATTCCCGCCGAGGTGA
LOC_Os09g10690
OsAffx.17638.1.S1_at--779--10851Chr09:5825762..5825786 (25 bp)
TTGGTTCTTGGCAAGGTAACGGTCG
LOC_Os09g10690
OsAffx.17638.1.S1_at--747--10511Chr09:5825766..5825790 (25 bp)
TTCTTGGCAAGGTAACGGTCGAGAG
LOC_Os09g10690
OsAffx.17638.1.S1_at--614--5891Chr09:5825891..5825915 (25 bp)
GAGCTCCGGGCAGCGGCAACGGAGA
LOC_Os09g10690
OsAffx.17638.1.S1_at--244--951Chr09:5825924..5825948 (25 bp)
AGGAAGATGACCTCGGCTGCCGCTG
LOC_Os09g10690
OsAffx.17638.1.S1_at--170--6311Chr09:5825929..5825953 (25 bp)
GATGACCTCGGCTGCCGCTGGTCGC
LOC_Os09g10690
Target Sequence 
GTGCGCAAGCGGTTCGACTCCGCCGCCGCCGGAGGCGGAGGTGGCTCAGGTTCTTCGGCTTCGGCGGCGTCGGAGGTGAC
GATGAGGAGCGCCATCCCGGTGCGCGGCGGCGCGGCGGCGGTGAGCGTCAGGTGGGGCGTGAGGATTCCCGCCGAGGTGA
CCGCCGGCGGGGAGGAGGGCGCGGCGGCGCTGGCGCTGCGGAGGCTGCCGTTCTTGGTTCTTGGCAAGGTAACGGTCGAG
AGGCGGCCACCGCCACCGCCGGCGAGCACCGCCGAGGAGACGACGACGACGACGGTGGAGAAGACGAGGAGGGAGAACGA
GAGGCTGACGAGGGAGCTGGACGAGCTCCGGGCAGCGGCAACGGAGAAGACGGAGAGGAAGATGACCTCGGCTGCCGCTG
GTCGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.17638.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis