Browse Element(s) Details


OsAffx.29796.1.S1_at

Description tigr:9637.m00827
TID=OsAffx.29796.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g1067011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g10640NANA9+5795957..5796607retrotransposon protein, putative, LINE subclass
LOC_Os09g10650NANA9+5799256..5805941Phosphatidylinositol-4-phosphate 5-Kinase family protein
LOC_Os09g10660OsAffx.17637.1.S1_at11/119+5816870..5818446hypothetical protein
LOC_Os09g10670OsAffx.29796.1.S1_at11/119+5819495..5819982hypothetical protein
LOC_Os09g10680NANA9+5821784..5823771hypothetical protein
LOC_Os09g10690OsAffx.17638.1.S1_at11/119+5825195..5826019expressed protein
LOC_Os09g10700NANA9+5828396..5830641hypothetical protein
LOC_Os09g10710Os.27173.1.A1_x_at11/119+5835661..5842899ENT domain containing protein, expressed
LOC_Os09g10710OsAffx.6228.1.S1_at11/119+5835661..5842899ENT domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29796.1.S1_at--1137--3531Chr09:5819917..5819941 (25 bp)
CATCGCTCACATGCTCGCTGTGGTT
LOC_Os09g10670
OsAffx.29796.1.S1_at--924--9691Chr09:5819911..5819935 (25 bp)
TCACATGCTCGCTGTGGTTCTTGCG
LOC_Os09g10670
OsAffx.29796.1.S1_at--1135--612Chr09:5819907..5819931 (25 bp)
ATGCTCGCTGTGGTTCTTGCGGCCA
LOC_Os09g10670
OsAffx.29796.1.S1_at--304--4731Chr09:5819901..5819925 (25 bp)
GCTGTGGTTCTTGCGGCCACGCACA
LOC_Os09g10670
OsAffx.29796.1.S1_at--689--4711Chr09:5819889..5819913 (25 bp)
GCGGCCACGCACAAGCTCAAGGAGA
LOC_Os09g10670
OsAffx.29796.1.S1_at--366--3211Chr09:5819872..5819896 (25 bp)
CAAGGAGAACCGTCCTGAAGCAGTA
LOC_Os09g10670
OsAffx.29796.1.S1_at--461--7991Chr09:5819869..5819893 (25 bp)
GGAGAACCGTCCTGAAGCAGTAAAT
LOC_Os09g10670
OsAffx.29796.1.S1_at--367--2591Chr09:5819865..5819889 (25 bp)
AACCGTCCTGAAGCAGTAAATGTCG
LOC_Os09g10670
OsAffx.29796.1.S1_at--518--3451Chr09:5819852..5819876 (25 bp)
CAGTAAATGTCGGTGCAGTGCTTGT
LOC_Os09g10670
OsAffx.29796.1.S1_at--596--2291Chr09:5819848..5819872 (25 bp)
AAATGTCGGTGCAGTGCTTGTGGCC
LOC_Os09g10670
OsAffx.29796.1.S1_at--132--7771Chr09:5819841..5819865 (25 bp)
GGTGCAGTGCTTGTGGCCGCCGCGT
LOC_Os09g10670
Target Sequence 
CATCGCTCACATGCTCGCTGTGGTTCTTGCGGCCACGCACAAGCTCAAGGAGAACCGTCCTGAAGCAGTAAATGTCGGTG
CAGTGCTTGTGGCCGCCGCGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29796.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis