Browse Element(s) Details


OsAffx.30038.1.S1_at

Description tigr:9637.m02296
TID=OsAffx.30038.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g2635011/11hypothetical protein
LOC_Os09g108802/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g26300Os.6003.1.S1_x_at3/119+15890789..15891986hypro1, putative, expressed
LOC_Os09g26300Os.5646.1.S1_at2/119+15890789..15891986hypro1, putative, expressed
LOC_Os09g26300OsAffx.3068.1.S1_x_at1/119+15890789..15891986hypro1, putative, expressed
LOC_Os09g26310Os.6003.1.S1_x_at11/119+15895392..15896947hypro1, putative, expressed
LOC_Os09g26310Os.51638.1.S1_s_at11/119+15895392..15896947hypro1, putative, expressed
LOC_Os09g26320OsAffx.30036.1.S1_at11/119+15909194..15910056hypro1, putative
LOC_Os09g26330OsAffx.30037.1.S1_at11/119+15913089..15914027hypro1, putative
LOC_Os09g26340Os.12348.2.S1_at11/119+15915010..15915482Histone H4, putative, expressed
LOC_Os09g26350OsAffx.30038.1.S1_at11/119+15915627..15916580hypothetical protein
LOC_Os09g26360Os.53386.1.S1_at11/119+15920630..15923037Pectinesterase family protein, expressed
LOC_Os09g26370Os.53428.1.S1_at11/119+15926026..15927142expressed protein
LOC_Os09g26380Os.54981.1.S1_at11/119+15929509..15935551Alanine aminotransferase 2, putative, expressed
LOC_Os09g26390Os.36729.1.A1_at11/119+15935998..15942226ARID/BRIGHT DNA binding domain containing protein, expressed
LOC_Os09g26390Os.52973.1.S1_at11/119+15935998..15942226ARID/BRIGHT DNA binding domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30038.1.S1_at--218--1831Chr09:15916180..15916204 (25 bp)
ACGCCGCGTGCGACTGCTACTACGA
LOC_Os09g26350
OsAffx.30038.1.S1_at--738--7571Chr09:15916115..15916139 (25 bp)
GGGCTGTTCAGGTCGGCCTTCTCGT
LOC_Os09g26350
OsAffx.30038.1.S1_at--664--10575Chr09:5964993..5965017 (25 bp)
TTCTCGTCCCACTGGGTGTTCTTCT
LOC_Os09g10880
OsAffx.30038.1.S1_at--548--8635Chr09:5965005..5965029 (25 bp)
TGGGTGTTCTTCTCCAACGTCGAGT
LOC_Os09g10880
OsAffx.30038.1.S1_at--1064--2571Chr09:15916070..15916094 (25 bp)
AACGTCGAGTTCCAGTCTCGCTTCC
LOC_Os09g26350
OsAffx.30038.1.S1_at--305--8471Chr09:15915784..15915808 (25 bp)
TGGCCGCGCAGCGTGCCATGATGCA
LOC_Os09g26350
OsAffx.30038.1.S1_at--130--7351Chr09:15915752..15915776 (25 bp)
GTGAAGGACGCCAGCCACGGCCCGT
LOC_Os09g26350
OsAffx.30038.1.S1_at--144--1951Chr09:15915736..15915760 (25 bp)
ACGGCCCGTGCGACTGGTACTTCGA
LOC_Os09g26350
OsAffx.30038.1.S1_at--415--5711Chr09:15915725..15915749 (25 bp)
GACTGGTACTTCGACACCGTCGGCG
LOC_Os09g26350
OsAffx.30038.1.S1_at--655--9331Chr09:15915667..15915691 (25 bp)
TCGGCCCTGCGGTGTTCGACCGTGC
LOC_Os09g26350
OsAffx.30038.1.S1_at--921--3971Chr09:15915658..15915682 (25 bp)
CGGTGTTCGACCGTGCGTCGTTCGA
LOC_Os09g26350
Target Sequence 
ACGCCGCGTGCGACTGCTACTACGACGCCGTCCGCGACGTCATGCGGCTGCTGGTCGGCGACGCCGGGCTGTTCAGGTCG
GCCTTCTCGTCCCACTGGGTGTTCTTCTCCAACGTCGAGTTCCAGTCTCGCTTCCGCGGCTACAACCCGGCCCCCGCCGT
GGCCGCCGCGTCCGCGCTCCGCTGGGTCCCTCACGCGGCGGCGGTGTCCGCCGTCCGCGCCCTGCTCGGCGCGTCCCACG
AGGACCTCCGGCTCCGCGTTCACGGCCTGTCGCGCTCGCTGAGCGGCGCGTTCTTCGCCGTCGCGCTGGTGGCCGCGCAG
CGTGCCATGATGCAGGTGGCGGTGAAGGACGCCAGCCACGGCCCGTGCGACTGGTACTTCGACACCGTCGGCGAGCTCAT
GCGGCTGCTGGTCGGCGACACCGGGGTCGGCCCTGCGGTGTTCGACCGTGCGTCGTTCGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30038.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis