Browse Element(s) Details


Os.53428.1.S1_at

Description gb:AK104973.1
DB_XREF= gi:32990182
TID=Os.53428.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53428 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-122-B03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-122-B03, full insert sequence.
FL= gb:AK072558.1 gb:AK104973.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g2637011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g26320OsAffx.30036.1.S1_at11/119+15909194..15910056hypro1, putative
LOC_Os09g26330OsAffx.30037.1.S1_at11/119+15913089..15914027hypro1, putative
LOC_Os09g26340Os.12348.2.S1_at11/119+15915010..15915482Histone H4, putative, expressed
LOC_Os09g26350OsAffx.30038.1.S1_at11/119+15915627..15916580hypothetical protein
LOC_Os09g26360Os.53386.1.S1_at11/119+15920630..15923037Pectinesterase family protein, expressed
LOC_Os09g26370Os.53428.1.S1_at11/119+15926026..15927142expressed protein
LOC_Os09g26380Os.54981.1.S1_at11/119+15929509..15935551Alanine aminotransferase 2, putative, expressed
LOC_Os09g26390Os.36729.1.A1_at11/119+15935998..15942226ARID/BRIGHT DNA binding domain containing protein, expressed
LOC_Os09g26390Os.52973.1.S1_at11/119+15935998..15942226ARID/BRIGHT DNA binding domain containing protein, expressed
LOC_Os09g26400Os.10042.1.S1_at11/119+15943523..15946916Zinc finger, C3HC4 type family protein, expressed
LOC_Os09g26410OsAffx.17908.1.S1_x_at11/119+15949527..15949966NA

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53428.1.S1_at--341--7771Chr09:15926431..15926455 (25 bp)
GGTGACTTCTTGAGCGCGTGCTCCC
LOC_Os09g26370
Os.53428.1.S1_at--399--5311Chr09:15926697..15926721 (25 bp)
GAAGGAGCGGCTAGGCCTGCATCAT
LOC_Os09g26370
Os.53428.1.S1_at--635--4491Chr09:15926779..15926803 (25 bp)
GCCGTAGCCTAGCACGAGCGAAGTA
LOC_Os09g26370
Os.53428.1.S1_at--632--631Chr09:15926808..15926832 (25 bp)
ATGCTATACTTGATGAGACCGTGAC
LOC_Os09g26370
Os.53428.1.S1_at--422--1391Chr09:15926823..15926847 (25 bp)
AGACCGTGACCCATGCTTGGATGAT
LOC_Os09g26370
Os.53428.1.S1_at--676--5511Chr09:15926860..15926884 (25 bp)
GAAAATTTTCTACTGTACTCTCTGT
LOC_Os09g26370
Os.53428.1.S1_at--632--4031Chr09:15926991..15927015 (25 bp)
CGTATACGCATAACTGCATGCAGTT
LOC_Os09g26370
Os.53428.1.S1_at--310--5571Chr09:15927051..15927075 (25 bp)
GAAAGAAGCTTTCCAGGTCTCATGG
LOC_Os09g26370
Os.53428.1.S1_at--443--1031Chr09:15927065..15927089 (25 bp)
AGGTCTCATGGGTACAAGTGTGCAA
LOC_Os09g26370
Os.53428.1.S1_at--610--5131Chr09:15927086..15927110 (25 bp)
GCAACTTAACTGTAACCTGCTCCTG
LOC_Os09g26370
Os.53428.1.S1_at--469--2631Chr09:15927099..15927123 (25 bp)
AACCTGCTCCTGCTTATGTGCAAAA
LOC_Os09g26370
Target Sequence 
GGTGACTTCTTGAGCGCGTGCTCCCTGTGCAGGCNGGAGCTCGGCCCCGACAAGGACGTGTACATGTACAGGGGTGANCA
GGGGTTCTGCAGCGAGGAGTGCAGGTGGCAGCAGATCATGACGGACGAGGCGAGGGAGCGGGACGCCATGGCCAAGAAGG
AGCGGCTAGGCCTGCATCATCGGACGCCGCGGCCGCCGCCGGCGGCGATNCGCGGCGNNNNNCNNNGGAGACTACTCGCC
GTAGCCTAGCACGAGCGAAGTACAGTATGCTATACTTGATGAGACCGTGACCCATGCTTGGATGATATATGATCAAAAGA
AAATTTTCTACTGTACTCTCTGTAAAATATGGAGAAATCGATGTAATTAAGAAAAACTTGATAAGGAGGAAGGAGAGAGA
GAGAGAGAGAGAGCCAGGTTTTGAGTAATTTGAGGCAAATTTGAGGAAACGTATACGCATAACTGCATGCAGTTTCATAT
TTCAAATGAACACGAAATGTTTGGTGGGGGAAAGAAGCTTTCCAGGTCTCATGGGTACAAGTGTGCAACTTAACTGTAAC
CTGCTCCTGCTTATGTGCAAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53428.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis