Browse Element(s) Details


Os.54981.1.S1_at

Description gb:AK107237.1
DB_XREF= gi:32992446
TID=Os.54981.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54981 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-125-F01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-125-F01, full insert sequence.
FL= gb:AK107237.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g2638011/11Alanine aminotransferase 2, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g26320OsAffx.30036.1.S1_at11/119+15909194..15910056hypro1, putative
LOC_Os09g26330OsAffx.30037.1.S1_at11/119+15913089..15914027hypro1, putative
LOC_Os09g26340Os.12348.2.S1_at11/119+15915010..15915482Histone H4, putative, expressed
LOC_Os09g26350OsAffx.30038.1.S1_at11/119+15915627..15916580hypothetical protein
LOC_Os09g26360Os.53386.1.S1_at11/119+15920630..15923037Pectinesterase family protein, expressed
LOC_Os09g26370Os.53428.1.S1_at11/119+15926026..15927142expressed protein
LOC_Os09g26380Os.54981.1.S1_at11/119+15929509..15935551Alanine aminotransferase 2, putative, expressed
LOC_Os09g26390Os.36729.1.A1_at11/119+15935998..15942226ARID/BRIGHT DNA binding domain containing protein, expressed
LOC_Os09g26390Os.52973.1.S1_at11/119+15935998..15942226ARID/BRIGHT DNA binding domain containing protein, expressed
LOC_Os09g26400Os.10042.1.S1_at11/119+15943523..15946916Zinc finger, C3HC4 type family protein, expressed
LOC_Os09g26410OsAffx.17908.1.S1_x_at11/119+15949527..15949966NA
LOC_Os09g26420Os.5850.1.S1_at11/119+15958400..15961886AP2 domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009853biological_processphotorespiration
GO:0005739cellular_componentmitochondrion
GO:0005777cellular_componentperoxisome
GO:0004021molecular_functionalanine transaminase activity
GO:0047958molecular_functionglycine transaminase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54981.1.S1_at--341--8571Chr09:15934965..15935081 (25 bp)
TGGATTTCACCCAGTCTCCGGGACA
LOC_Os09g26380
Os.54981.1.S1_at--588--5771Chr09:15935117..15935141 (25 bp)
GACGATCACGGCGATGGTTCCCAGC
LOC_Os09g26380
Os.54981.1.S1_at--1059--9211Chr09:15935143..15935167 (25 bp)
TCCAGGCGTTCCATGAGGCGTTCAT
LOC_Os09g26380
Os.54981.1.S1_at--1102--6051Chr09:15935172..15935196 (25 bp)
GAGTTTCGCGGCTGATCGATTGAGC
LOC_Os09g26380
Os.54981.1.S1_at--651--3391Chr09:15935235..15935259 (25 bp)
CAGCTGTGCCATGCCTTGAGTTACA
LOC_Os09g26380
Os.54981.1.S1_at--116--10011Chr09:15935273..15935297 (25 bp)
TAGCGGAGCTGTTGCTTGTCGTCTG
LOC_Os09g26380
Os.54981.1.S1_at--628--3631Chr09:15935299..15935323 (25 bp)
CTTGCTTAGCTTCCTGTTTGTGTAA
LOC_Os09g26380
Os.54981.1.S1_at--55--6871Chr09:15935314..15935338 (25 bp)
GTTTGTGTAATGTCCATCGGTCCAT
LOC_Os09g26380
Os.54981.1.S1_at--746--5711Chr09:15935341..15935365 (25 bp)
GACTCCATGCATGTGTGCCGTATTA
LOC_Os09g26380
Os.54981.1.S1_at--708--1131Chr09:15935374..15935398 (25 bp)
AGTGCGTTTTAGTTATGCGCCTATA
LOC_Os09g26380
Os.54981.1.S1_at--755--4551Chr09:15935390..15935414 (25 bp)
GCGCCTATATGCAAAACTCGTGGAA
LOC_Os09g26380
Target Sequence 
TGGATTTCACCCAGTCTCCGGGACATCGCACATCCGGTGCACCATCCTCCCCGGCGAGGAGACGATCACGGCGATGGTTC
CCAGCCTCCAGGCGTTCCATGAGGCGTTCATGGACGAGTTTCGCGGCTGATCGATTGAGCTTCGTGAAGCAACAGAATTT
GGCAGATCACAAGATCGGCAGCTGTGCCATGCCTTGAGTTACACAGGAGATACAGCTAGCGGAGCTGTTGCTTGTCGTCT
GGCTTGCTTAGCTTCCTGTTTGTGTAATGTCCATCGGTCCATTGGACTCCATGCATGTGTGCCGTATTATAACTGCAAGT
GCGTTTTAGTTATGCGCCTATATGCAAAACTCGTGGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54981.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis