Browse Element(s) Details


Os.36729.1.A1_at

Description gb:AK062791.1
DB_XREF= gi:32972809
TID=Os.36729.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=4
UG=Os.36729 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-107-C02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-107-C02, full insert sequence.
FL= gb:AK062791.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g2639011/11ARID/BRIGHT DNA binding domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g26330OsAffx.30037.1.S1_at11/119+15913089..15914027hypro1, putative
LOC_Os09g26340Os.12348.2.S1_at11/119+15915010..15915482Histone H4, putative, expressed
LOC_Os09g26350OsAffx.30038.1.S1_at11/119+15915627..15916580hypothetical protein
LOC_Os09g26360Os.53386.1.S1_at11/119+15920630..15923037Pectinesterase family protein, expressed
LOC_Os09g26370Os.53428.1.S1_at11/119+15926026..15927142expressed protein
LOC_Os09g26380Os.54981.1.S1_at11/119+15929509..15935551Alanine aminotransferase 2, putative, expressed
LOC_Os09g26390Os.36729.1.A1_at11/119+15935998..15942226ARID/BRIGHT DNA binding domain containing protein, expressed
LOC_Os09g26390Os.52973.1.S1_at11/119+15935998..15942226ARID/BRIGHT DNA binding domain containing protein, expressed
LOC_Os09g26400Os.10042.1.S1_at11/119+15943523..15946916Zinc finger, C3HC4 type family protein, expressed
LOC_Os09g26410OsAffx.17908.1.S1_x_at11/119+15949527..15949966NA
LOC_Os09g26420Os.5850.1.S1_at11/119+15958400..15961886AP2 domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005622cellular_componentintracellular
GO:0003677molecular_functionDNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.36729.1.A1_at--302--191Chr09:15936676..15936700 (25 bp)
ATTTACTGGAATATGAGCTAGCTCA
LOC_Os09g26390
Os.36729.1.A1_at--672--7611Chr09:15936637..15936661 (25 bp)
GGGAATGCTGTTTGCTTTGCCACAG
LOC_Os09g26390
Os.36729.1.A1_at--618--10291Chr09:15936525..15936646 (25 bp)
TTTGCCACAGTAGCGCTCCTGGAGA
LOC_Os09g26390
Os.36729.1.A1_at--538--5651Chr09:15936454..15936478 (25 bp)
GACAGACGACAAGGCCTAGGCACTT
LOC_Os09g26390
Os.36729.1.A1_at--931--791Chr09:15936330..15936354 (25 bp)
ATGGGCTGGAATACATCTGCCCTCA
LOC_Os09g26390
Os.36729.1.A1_at--488--9491Chr09:15936315..15936339 (25 bp)
TCTGCCCTCACTGTAGTCTAGCAAA
LOC_Os09g26390
Os.36729.1.A1_at--323--4291Chr09:15936277..15936301 (25 bp)
CCTCCTCCCCAAAAGGTAGCTAATG
LOC_Os09g26390
Os.36729.1.A1_at--1134--851Chr09:15936255..15936279 (25 bp)
ATGGCTTTGCGAATACAGTGTCTGT
LOC_Os09g26390
Os.36729.1.A1_at--606--1111Chr09:15936121..15936145 (25 bp)
AGTGTTGTGATCTGTATTACCCTAT
LOC_Os09g26390
Os.36729.1.A1_at--1055--131Chr09:15936106..15936130 (25 bp)
ATTACCCTATTAATTTGGTTCAGCG
LOC_Os09g26390
Os.36729.1.A1_at--358--3611Chr09:15936031..15936055 (25 bp)
CTACTACGGTAGCTGGTCAAATTAA
LOC_Os09g26390
Target Sequence 
ATTTACTGGAATATGAGCTAGCTCATGATGATGTAGACGGGGAATGCTGTTTGCTTTGCCACAGTAGCGCTCCTGGAGAT
TGGGTGAACTGTGGTTTGTGTGGTGAATGGGCACATTTTGGTTGTGACAGACGACAAGGCCTAGGCACTTTCAAGGATTA
TGCAAAGACAGATGGGCTGGAATACATCTGCCCTCACTGTAGTCTAGCAAACTATAAGAAGAAACCTCCTCCCCAAAAGG
TAGCTAATGGCTTTGCGAATACAGTGTCTGTATCACGAAATGTTTAGTTTTCCTTTCTTCTTTTTTGCCCTGTGTTTCGG
GGAGAAGAGCCCAGTAGAGTAGAGAATAGGCAGGCTGCTGATAGAGAGAGGAAGGTGTGTAGTGTTGTGATCTGTATTAC
CCTATTAATTTGGTTCAGCGTAGGAAGCTTAAGTTTTATATAGAATGTAACAACTGACAACACAGCTAAGCTACTACGGT
AGCTGGTCAAATTAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.36729.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis