Browse Element(s) Details


Os.12348.2.S1_at

Description gb:AK058686.1
DB_XREF= gi:32968704
TID=Os.12348.2
CNT=13
FEA=FLmRNA
TIER=FL
STK=5
UG=Os.12348 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative histone H4 (P0506B12.16), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-019-A10, full insert sequence.
FL= gb:AK058686.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g2634011/11Histone H4, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g26300Os.6003.1.S1_x_at3/119+15890789..15891986hypro1, putative, expressed
LOC_Os09g26300Os.5646.1.S1_at2/119+15890789..15891986hypro1, putative, expressed
LOC_Os09g26300OsAffx.3068.1.S1_x_at1/119+15890789..15891986hypro1, putative, expressed
LOC_Os09g26310Os.6003.1.S1_x_at11/119+15895392..15896947hypro1, putative, expressed
LOC_Os09g26310Os.51638.1.S1_s_at11/119+15895392..15896947hypro1, putative, expressed
LOC_Os09g26320OsAffx.30036.1.S1_at11/119+15909194..15910056hypro1, putative
LOC_Os09g26330OsAffx.30037.1.S1_at11/119+15913089..15914027hypro1, putative
LOC_Os09g26340Os.12348.2.S1_at11/119+15915010..15915482Histone H4, putative, expressed
LOC_Os09g26350OsAffx.30038.1.S1_at11/119+15915627..15916580hypothetical protein
LOC_Os09g26360Os.53386.1.S1_at11/119+15920630..15923037Pectinesterase family protein, expressed
LOC_Os09g26370Os.53428.1.S1_at11/119+15926026..15927142expressed protein
LOC_Os09g26380Os.54981.1.S1_at11/119+15929509..15935551Alanine aminotransferase 2, putative, expressed
LOC_Os09g26390Os.36729.1.A1_at11/119+15935998..15942226ARID/BRIGHT DNA binding domain containing protein, expressed
LOC_Os09g26390Os.52973.1.S1_at11/119+15935998..15942226ARID/BRIGHT DNA binding domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006334biological_processnucleosome assembly
GO:0007001biological_processchromosome organization and biogenesis (sensu Eukaryota)
GO:0009414biological_processresponse to water deprivation
GO:0000786cellular_componentnucleosome
GO:0005634cellular_componentnucleus
GO:0003677molecular_functionDNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12348.2.S1_at--737--4911Chr09:15915358..15915382 (25 bp)
GCTTCGGCGGCTAGGAGCCTTTTGC
LOC_Os09g26340
Os.12348.2.S1_at--74--4871Chr09:15915367..15915391 (25 bp)
GCTAGGAGCCTTTTGCATTGTGTTT
LOC_Os09g26340
Os.12348.2.S1_at--834--9051Chr09:15915380..15915404 (25 bp)
TGCATTGTGTTTGTCTTGTTAGGAA
LOC_Os09g26340
Os.12348.2.S1_at--260--6871Chr09:15915388..15915412 (25 bp)
GTTTGTCTTGTTAGGAATCTGCTTG
LOC_Os09g26340
Os.12348.2.S1_at--602--6771Chr09:15915397..15915421 (25 bp)
GTTAGGAATCTGCTTGTTTCGGATG
LOC_Os09g26340
Os.12348.2.S1_at--932--471Chr09:15915404..15915428 (25 bp)
ATCTGCTTGTTTCGGATGTAGCCCT
LOC_Os09g26340
Os.12348.2.S1_at--44--3631Chr09:15915409..15915433 (25 bp)
CTTGTTTCGGATGTAGCCCTGTATC
LOC_Os09g26340
Os.12348.2.S1_at--1025--6271Chr09:15915418..15915442 (25 bp)
GATGTAGCCCTGTATCCTGTAATGA
LOC_Os09g26340
Os.12348.2.S1_at--5--6971Chr09:15915421..15915445 (25 bp)
GTAGCCCTGTATCCTGTAATGAAGA
LOC_Os09g26340
Os.12348.2.S1_at--606--4531Chr09:15915424..15915448 (25 bp)
GCCCTGTATCCTGTAATGAAGAAAA
LOC_Os09g26340
Os.12348.2.S1_at--641--3011Chr09:15915447..15915471 (25 bp)
AATGCTAGCAGTAAAACTTGTTTGA
LOC_Os09g26340
Target Sequence 
GCTTCGGCGGCTAGGAGCCTTTTGCATTGTGTTTGTCTTGTTAGGAATCTGCTTGTTTCGGATGTAGCCCTGTATCCTGT
AATGAAGAAAATGCTAGCAGTAAAACTTGTTTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12348.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis