Browse Element(s) Details


Os.6003.1.S1_x_at

Description gb:AK069858.1
DB_XREF= gi:32979882
TID=Os.6003.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.6003 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023035N15, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023035N15, full insert sequence.
FL= gb:AK069858.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g2631011/11hypro1, putative, expressed
LOC_Os09g263003/11hypro1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g26270OsAffx.6405.1.S1_at11/119+15873527..15875552hypothetical protein
LOC_Os09g26270OsAffx.31003.1.S1_x_at1/119+15873527..15875552hypothetical protein
LOC_Os09g26280NANA9+15879528..15880667transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g26290NANA9+15887896..15889073hypothetical protein
LOC_Os09g26300Os.6003.1.S1_x_at3/119+15890789..15891986hypro1, putative, expressed
LOC_Os09g26300Os.5646.1.S1_at2/119+15890789..15891986hypro1, putative, expressed
LOC_Os09g26300OsAffx.3068.1.S1_x_at1/119+15890789..15891986hypro1, putative, expressed
LOC_Os09g26310Os.6003.1.S1_x_at11/119+15895392..15896947hypro1, putative, expressed
LOC_Os09g26310Os.51638.1.S1_s_at11/119+15895392..15896947hypro1, putative, expressed
LOC_Os09g26320OsAffx.30036.1.S1_at11/119+15909194..15910056hypro1, putative
LOC_Os09g26330OsAffx.30037.1.S1_at11/119+15913089..15914027hypro1, putative
LOC_Os09g26340Os.12348.2.S1_at11/119+15915010..15915482Histone H4, putative, expressed
LOC_Os09g26350OsAffx.30038.1.S1_at11/119+15915627..15916580hypothetical protein
LOC_Os09g26360Os.53386.1.S1_at11/119+15920630..15923037Pectinesterase family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016757molecular_functiontransferase activity, transferring glycosyl groups
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.6003.1.S1_x_at--915--8992Chr09:15896374..15896398 (25 bp)
TGAAGACCGACGACGACACGTACCT
LOC_Os09g26310
Os.6003.1.S1_x_at--147--3971Chr09:15896197..15896221 (25 bp)
CGGAGGAGATCCTCGCGCGCAACGA
LOC_Os09g26310
Os.6003.1.S1_x_at--737--4291Chr09:15896154..15896178 (25 bp)
CCTCATGGTCGGGAAGTGGCTCAAC
LOC_Os09g26310
Os.6003.1.S1_x_at--209--8431Chr09:15896117..15896141 (25 bp)
GGCCGGAATCGCTACGACCTCAAGC
LOC_Os09g26310
Os.6003.1.S1_x_at--45--3752Chr09:15896099..15896123 (25 bp)
CTCAAGCCGCGGATGTACGACCTCA
LOC_Os09g26310
Os.6003.1.S1_x_at--136--9951Chr09:15896084..15896108 (25 bp)
TACGACCTCAGCTGGGACATGGACA
LOC_Os09g26310
Os.6003.1.S1_x_at--169--7592Chr09:15896071..15896095 (25 bp)
GGGACATGGACAACTTCCGGCCGGA
LOC_Os09g26310
Os.6003.1.S1_x_at--946--7571Chr09:15896008..15896032 (25 bp)
GGGCGGCGGCGTTCAGCTACTTCAA
LOC_Os09g26310
Os.6003.1.S1_x_at--408--4291Chr09:15895956..15895980 (25 bp)
CCTCTCACCATGATCGATCGATCGA
LOC_Os09g26310
Os.6003.1.S1_x_at--973--511Chr09:15895936..15895960 (25 bp)
ATCGATCGATCACCTCTTCGATGAT
LOC_Os09g26310
Os.6003.1.S1_x_at--848--9531Chr09:15895889..15895913 (25 bp)
TCTTCCCCGTTTGATTAATTCTAAT
LOC_Os09g26310
Target Sequence 
TGAAGACCGACGACGACACGTACCTCCGCGTGGCGGCGCTCGCCGACGAGCTCCGCGGCAAGCCCCGCGACGACGTCTAC
CTCGGCTACGGNTACGCCATGGGCGGCCAGCCGATGCCGTTCATGCACGGCATGGGGTACGTCGTGTCGTGGGACGTCGC
GACGTGGGTGTCCACGGCGGAGGAGATCCTCGCGCGCAACGACACGGAGGGGCCCGAGGACCTCATGGTCGGGAAGTGGC
TCAACCTCGCCGGACGCGGCCGGAATCGCTACGACCTCAAGCCGCGGATGTACGACCTCAGCTGGGACATGGACAACTTC
CGGCCGGACACCGTCGCCGTGCACATGCTCAAGGACAACCGCCGGTGGGCGGCGGCGTTCAGCTACTTCAACGTCACCGC
CGGGATCAACCTGCACCACCTCTCACCATGATCGATCGATCGATCGATCACCTCTTCGATGATCCATAATTGTTGTTTGT
TAATTTCTTCCCCGTTTGATTAATTCTAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.6003.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis