Browse Element(s) Details


OsAffx.6405.1.S1_at

Description tigr:9637.m02287
TID=OsAffx.6405.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g2627011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g26240NANA9+15848808..15856672transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g26250OsAffx.4557.1.S1_s_at1/119+15861573..15861910hypothetical protein
LOC_Os09g26260OsAffx.30035.1.S1_at11/119+15867459..15869030AAA-type ATPase family protein, putative, expressed
LOC_Os09g26260OsAffx.30035.1.S1_x_at11/119+15867459..15869030AAA-type ATPase family protein, putative, expressed
LOC_Os09g26270OsAffx.6405.1.S1_at11/119+15873527..15875552hypothetical protein
LOC_Os09g26270OsAffx.31003.1.S1_x_at1/119+15873527..15875552hypothetical protein
LOC_Os09g26280NANA9+15879528..15880667transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g26290NANA9+15887896..15889073hypothetical protein
LOC_Os09g26300Os.6003.1.S1_x_at3/119+15890789..15891986hypro1, putative, expressed
LOC_Os09g26300Os.5646.1.S1_at2/119+15890789..15891986hypro1, putative, expressed
LOC_Os09g26300OsAffx.3068.1.S1_x_at1/119+15890789..15891986hypro1, putative, expressed
LOC_Os09g26310Os.6003.1.S1_x_at11/119+15895392..15896947hypro1, putative, expressed
LOC_Os09g26310Os.51638.1.S1_s_at11/119+15895392..15896947hypro1, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.6405.1.S1_at--921--7551Chr09:15875129..15875153 (25 bp)
GGGCCGTCCAGATATAGTGGTCTTC
LOC_Os09g26270
OsAffx.6405.1.S1_at--263--7271Chr09:15875134..15875158 (25 bp)
GTCCAGATATAGTGGTCTTCGACCA
LOC_Os09g26270
OsAffx.6405.1.S1_at--119--10071Chr09:15875143..15875167 (25 bp)
TAGTGGTCTTCGACCACCTTGAGAC
LOC_Os09g26270
OsAffx.6405.1.S1_at--60--1471Chr09:15875233..15875257 (25 bp)
AGAAGGAGGCGACTGCTGGAGCATG
LOC_Os09g26270
OsAffx.6405.1.S1_at--190--5072Chr10:12168221..12168279 (24 bp)
GCAGCTAGGAGCTCGTGGCGACAAA
NONE
OsAffx.6405.1.S1_at--1--8391Chr09:15875322..15875346 (25 bp)
GGCGACAAAGAGACGGTGACCAATG
LOC_Os09g26270
OsAffx.6405.1.S1_at--613--5991Chr09:15875331..15875355 (25 bp)
GAGACGGTGACCAATGATCGACCTT
LOC_Os09g26270
OsAffx.6405.1.S1_at--549--711Chr09:15875344..15875368 (25 bp)
ATGATCGACCTTGGGCAGTGCACAA
LOC_Os09g26270
OsAffx.6405.1.S1_at--1146--1731Chr09:15875351..15875375 (25 bp)
ACCTTGGGCAGTGCACAAAGGAGGC
LOC_Os09g26270
OsAffx.6405.1.S1_at--1151--971Chr09:15875369..15875393 (25 bp)
AGGAGGCGGCTTGCTCGAGCTCCTA
LOC_Os09g26270
OsAffx.6405.1.S1_at--920--4691Chr09:15875374..15875398 (25 bp)
GCGGCTTGCTCGAGCTCCTAGAGGC
LOC_Os09g26270
Target Sequence 
GGGCCGTCCAGATATAGTGGTCTTCGACCACCTTGAGACCAGATCTGGCGCCAAGGAGCTCGAGACGGCGGAGAGACGGT
GGCCGGTGACCTTGGGATTGAGGGAGAAGGAGGCGACTGCTGGAGCATGGGGGGCATCTAGATCCTGTGGTCCCCAACCA
CCTGGAGAACGGATCTGGCAGCTAGGAGCTCGTGGCGACAAAGAGACGGTGACCAATGATCGACCTTGGGCAGTGCACAA
AGGAGGCGGCTTGCTCGAGCTCCTAGAGGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.6405.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis