Browse Element(s) Details


OsAffx.30037.1.S1_at

Description tigr:9637.m02294
TID=OsAffx.30037.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Galactosyltransferase, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g2633011/11hypro1, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g26290NANA9+15887896..15889073hypothetical protein
LOC_Os09g26300Os.6003.1.S1_x_at3/119+15890789..15891986hypro1, putative, expressed
LOC_Os09g26300Os.5646.1.S1_at2/119+15890789..15891986hypro1, putative, expressed
LOC_Os09g26300OsAffx.3068.1.S1_x_at1/119+15890789..15891986hypro1, putative, expressed
LOC_Os09g26310Os.6003.1.S1_x_at11/119+15895392..15896947hypro1, putative, expressed
LOC_Os09g26310Os.51638.1.S1_s_at11/119+15895392..15896947hypro1, putative, expressed
LOC_Os09g26320OsAffx.30036.1.S1_at11/119+15909194..15910056hypro1, putative
LOC_Os09g26330OsAffx.30037.1.S1_at11/119+15913089..15914027hypro1, putative
LOC_Os09g26340Os.12348.2.S1_at11/119+15915010..15915482Histone H4, putative, expressed
LOC_Os09g26350OsAffx.30038.1.S1_at11/119+15915627..15916580hypothetical protein
LOC_Os09g26360Os.53386.1.S1_at11/119+15920630..15923037Pectinesterase family protein, expressed
LOC_Os09g26370Os.53428.1.S1_at11/119+15926026..15927142expressed protein
LOC_Os09g26380Os.54981.1.S1_at11/119+15929509..15935551Alanine aminotransferase 2, putative, expressed
LOC_Os09g26390Os.36729.1.A1_at11/119+15935998..15942226ARID/BRIGHT DNA binding domain containing protein, expressed
LOC_Os09g26390Os.52973.1.S1_at11/119+15935998..15942226ARID/BRIGHT DNA binding domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016757molecular_functiontransferase activity, transferring glycosyl groups
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30037.1.S1_at--956--951Chr09:15913660..15913684 (25 bp)
AGGACCGCGTCCTGGTGTCCCTGGA
LOC_Os09g26330
OsAffx.30037.1.S1_at--69--8551Chr09:15913612..15913636 (25 bp)
TGGAGCTCGACTGCCCGGAGAACAT
LOC_Os09g26330
OsAffx.30037.1.S1_at--478--4611Chr09:15913438..15913462 (25 bp)
GCGACCTCTACTACGGGTGCATGGT
LOC_Os09g26330
OsAffx.30037.1.S1_at--522--7331Chr09:15913422..15913446 (25 bp)
GTGCATGGTGCCGTGCGACTACGTC
LOC_Os09g26330
OsAffx.30037.1.S1_at--158--5751Chr09:15913403..15913427 (25 bp)
TACGTCCGCGGCTCGAACGAGTACA
LOC_Os09g26330
OsAffx.30037.1.S1_at--856--3931Chr09:15913395..15913419 (25 bp)
CGGCTCGAACGAGTACATGTCCGGC
LOC_Os09g26330
OsAffx.30037.1.S1_at--965--1751Chr09:15913363..15913387 (25 bp)
ACCTGCTGTCGTGGGACCTCGTGGA
LOC_Os09g26330
OsAffx.30037.1.S1_at--138--7711Chr09:15913237..15913261 (25 bp)
GGGTGGACGTGAAGCCGGCCATGTA
LOC_Os09g26330
OsAffx.30037.1.S1_at--141--8431Chr09:15913221..15913245 (25 bp)
GGCCATGTACAACTTCCCCGGGAGG
LOC_Os09g26330
OsAffx.30037.1.S1_at--314--8011Chr09:15913201..15913225 (25 bp)
GGAGGCACCCGTGCTCGCACGAGTT
LOC_Os09g26330
OsAffx.30037.1.S1_at--702--7551Chr09:15913129..15913153 (25 bp)
GGGCGAGGACGCTCCAGTACTTCAA
LOC_Os09g26330
Target Sequence 
AGGACCGCGTCCTGGTGTCCCTGGAGGCGATGGCGTACGGCGACGTGGTGGAGCTCGACTGCCCGGAGAACATGGACAAC
GGCAAGACCCACGCCTACTTCTCCAGCGTGCCGCGCCTCTTCGGCGGCGGCGAAGCCGCCTACGACTTCGTCATGAAGGC
CGACGACGACACCTTCTTCCGGCTGCCGGAGCTCGCCGAGTCGCTGTCGCGAGCGCCGCGGCGCGACCTCTACTACGGGT
GCATGGTGCCGTGCGACTACGTCCGCGGCTCGAACGAGTACATGTCCGGCATGGGGTACCTGCTGTCGTGGGACCTCGTG
GAGTGGATCGTGGCGGCGGCGGCGGAGATCGAGGGGAGGACGGGCGGGCCGGAGGACCGGACGCTCTACTCGTGGCTCCG
ACGCGGCGGCAGGGGCAGGAACCGGGTGGACGTGAAGCCGGCCATGTACAACTTCCCCGGGAGGCACCCGTGCTCGCACG
AGTTCATACCGGACACCATCGCCGTGCACCAGCTCAAGGACAACCGCCGGTGGGCGAGGACGCTCCAGTACTTCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30037.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis