Browse Element(s) Details


Os.10042.1.S1_at

Description gb:AK103447.1
DB_XREF= gi:32988656
TID=Os.10042.1
CNT=25
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.10042 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033129G15, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033129G15, full insert sequence.
FL= gb:AK062015.1 gb:AK103447.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g2640011/11Zinc finger, C3HC4 type family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g26360Os.53386.1.S1_at11/119+15920630..15923037Pectinesterase family protein, expressed
LOC_Os09g26370Os.53428.1.S1_at11/119+15926026..15927142expressed protein
LOC_Os09g26380Os.54981.1.S1_at11/119+15929509..15935551Alanine aminotransferase 2, putative, expressed
LOC_Os09g26390Os.36729.1.A1_at11/119+15935998..15942226ARID/BRIGHT DNA binding domain containing protein, expressed
LOC_Os09g26390Os.52973.1.S1_at11/119+15935998..15942226ARID/BRIGHT DNA binding domain containing protein, expressed
LOC_Os09g26400Os.10042.1.S1_at11/119+15943523..15946916Zinc finger, C3HC4 type family protein, expressed
LOC_Os09g26410OsAffx.17908.1.S1_x_at11/119+15949527..15949966NA
LOC_Os09g26420Os.5850.1.S1_at11/119+15958400..15961886AP2 domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005515molecular_functionprotein binding
GO:0008270molecular_functionzinc ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10042.1.S1_at--388--2671Chr09:15944763..15944787 (25 bp)
AAGCCGCTTTGGAAGAATCTCTGCA
LOC_Os09g26400
Os.10042.1.S1_at--400--871Chr09:15944171..15944195 (25 bp)
ATGGCGAATCCTAAGGTGCCTCCAG
LOC_Os09g26400
Os.10042.1.S1_at--442--1151Chr09:15944136..15944160 (25 bp)
AGTCGTTGCGAATCTACCAGTTGTA
LOC_Os09g26400
Os.10042.1.S1_at--1038--1351Chr09:15944076..15944100 (25 bp)
AGAGACTCAGTGTGCTGTTTGCCGG
LOC_Os09g26400
Os.10042.1.S1_at--702--971Chr09:15944023..15944047 (25 bp)
AGGAGCTACCGTGCAAGCATCTTTT
LOC_Os09g26400
Os.10042.1.S1_at--731--1691Chr09:15943871..15944005 (25 bp)
AGCCATGGCTGGACGAGAACAACTC
LOC_Os09g26400
Os.10042.1.S1_at--790--5091Chr09:15943831..15943855 (25 bp)
GCACGAGCTGAGGACGGACGACCAT
LOC_Os09g26400
Os.10042.1.S1_at--160--5791Chr09:15943815..15943839 (25 bp)
GACGACCATGTGTACGAGAGCCGGA
LOC_Os09g26400
Os.10042.1.S1_at--30--2631Chr09:15943697..15943721 (25 bp)
AACCGAACGTGATTATCTCTCTGTA
LOC_Os09g26400
Os.10042.1.S1_at--741--10511Chr09:15943607..15943631 (25 bp)
TTCACCACCGTATCTTCGTTGAATG
LOC_Os09g26400
Os.10042.1.S1_at--919--711Chr09:15943585..15943609 (25 bp)
ATGATACTACCACTATACAGCCAGC
LOC_Os09g26400
Target Sequence 
AAGCCGCTTTGGAAGAATCTCTGCAGAATGTGATGGCGAATCCTAAGGTGCCTCCAGCTTCAAAGGAAGTCGTTGCGAAT
CTACCAGTTGTAACCGTGACAGAAGAAATCATAGCTAGATTGGGCAAAGAGACTCAGTGTGCTGTTTGCCGGGAGAGCTT
GCTGGTGGACGACAAGATGCAGGAGCTACCGTGCAAGCATCTTTTCCACCCTCCATGCCTCAAGCCATGGCTGGACGAGA
ACAACTCCTGCCCGATCTGCCGGCACGAGCTGAGGACGGACGACCATGTGTACGAGAGCCGGAAGGAGCGGGAGCGAGAA
GAGGAGGAAGACAGGAAGGGCGCCGCGAATGCTGTCAGGGGTGGGGAGTTCATGTATGTCTGAACATCTGAATTTCAACC
GAACGTGATTATCTCTCTGTAACGATTTCCTGAAATTCAGAGTGCACTGGAGTTGAAAATTCATGTACAAACAACGTTTG
CTTCGGTTCACCACCGTATCTTCGTTGAATGATACTACCACTATACAGCCAGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10042.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis