Browse Element(s) Details


Os.17487.1.S1_at

Description gb:CB670993
DB_XREF= gi:29674718
DB_XREF=OSJNEe04F14.r
CLONE=OSJNEe04F14
TID=Os.17487.1
CNT=53
FEA=FLmRNA
TIER=Stack
STK=9
UG=Os.17487 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013132M18, full insert sequence
FL= gb:AK120563.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5031011/11CCT motif family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g50290Os.2673.1.S1_at11/113+28612940..2861712414-3-3-like protein S94, putative, expressed
LOC_Os03g50300Os.25254.1.A1_at11/113+28620469..28628207expressed protein
LOC_Os03g50300Os.25254.2.S1_at11/113+28620469..28628207expressed protein
LOC_Os03g50310Os.17487.1.S1_at11/113+28636132..28638887CCT motif family protein, expressed
LOC_Os03g50320Os.4752.1.S1_at11/113+28639490..28645929Phosphatidylinositol 3- and 4-kinase family protein, expressed
LOC_Os03g50330Os.25160.1.S1_at11/113+28657837..28665388Protein kinase domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0045036biological_processprotein targeting to chloroplast
GO:0045449biological_processregulation of transcription
GO:0005634cellular_componentnucleus
GO:0003700molecular_functiontranscription factor activity
GO:0008270molecular_functionzinc ion binding
GO:0030528molecular_functiontranscription regulator activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.17487.1.S1_at--853--7551Chr03:28638159..28638183 (25 bp)
GGGCGCTACCGTTTTTGAGAGCTAC
LOC_Os03g50310
Os.17487.1.S1_at--318--4571Chr03:28638211..28638235 (25 bp)
GCGCGCGTCGTCTAGCTACATGCAT
LOC_Os03g50310
Os.17487.1.S1_at--136--1651Chr03:28638247..28638271 (25 bp)
AGCGATAGCCGTTTGCGTGATCCAA
LOC_Os03g50310
Os.17487.1.S1_at--1102--7211Chr03:28638320..28638344 (25 bp)
GTCGAATCATCGATCGTAGCATGTT
LOC_Os03g50310
Os.17487.1.S1_at--424--4031Chr03:28638334..28638358 (25 bp)
CGTAGCATGTTGGTTTCAGGTTTAA
LOC_Os03g50310
Os.17487.1.S1_at--82--3051Chr03:28638393..28638417 (25 bp)
AATCTTTGTGAATTAGGGCGCCCTA
LOC_Os03g50310
Os.17487.1.S1_at--1017--3691Chr03:28638415..28638439 (25 bp)
CTACCACTCTACTATACGTACCAAA
LOC_Os03g50310
Os.17487.1.S1_at--670--6971Chr03:28638432..28638456 (25 bp)
GTACCAAATGTACCATGCATGTGTG
LOC_Os03g50310
Os.17487.1.S1_at--632--791Chr03:28638450..28638474 (25 bp)
ATGTGTGCACTGAAGCAGCCGGCAG
LOC_Os03g50310
Os.17487.1.S1_at--252--4491Chr03:28638467..28638491 (25 bp)
GCCGGCAGGTTGTGTACTTGTGCAC
LOC_Os03g50310
Os.17487.1.S1_at--112--7991Chr03:28638543..28638567 (25 bp)
GGATGTGTACTTTCTTGGTTTTCTG
LOC_Os03g50310
Target Sequence 
GGGCGCTACCGTTTTTGAGAGCTACCGCTCTCGATCGGCTTCCGATGCGCATGCGCGCGTCGTCTAGCTACATGCATGCA
TGCATGCTAGCGATAGCCGTTTGCGTGATCCAACAATAAGTACAAAAATACTACTATATATATATACAAACATACAAACT
CGTCGAATCATCGATCGTAGCATGTTGGTTTCAGGTTTAATTGTTTGGGGGTAGTGTTAGTTTTGAGCAGAATTAATCTT
TGTGAATTAGGGCGCCCTACCACTCTACTATACGTACCAAATGTACCATGCATGTGTGCACTGAAGCAGCCGGCAGGTTG
TGTACTTGTGCACAATTTCATGTGCAAATTAAGTAGGTAAGTTATGTGTGTGGTAGCTAGGCTAGGATGTGTACTTTCTT
GGTTTTCTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.17487.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis