Browse Element(s) Details


Os.17518.1.S1_at

Description gb:AK101691.1
DB_XREF= gi:32986900
TID=Os.17518.1
CNT=31
FEA=FLmRNA
TIER=FL
STK=5
UG=Os.17518 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033092M02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033059K10, full insert sequence.
FL= gb:AK073064.1 gb:AK102407.1 gb:AK101691.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3591011/11GM10183p, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g35890Os.5068.1.A1_x_at11/114+21691556..21694399Protein kinase domain containing protein, expressed
LOC_Os04g35900Os.6065.1.S1_at11/114+21699617..21705606translocon Tic40, putative, expressed
LOC_Os04g35910Os.17518.1.S1_at11/114+21705978..21709024GM10183p, putative, expressed
LOC_Os04g35920Os.14326.1.S1_at11/114+21709705..21717379Smg-4/UPF3 family protein, expressed
LOC_Os04g35930OsAffx.4004.1.S1_at11/114+21718563..21721490F-box domain containing protein
LOC_Os04g35930Os.22699.1.S1_at1/114+21718563..21721490F-box domain containing protein
LOC_Os04g35940Os.53263.1.S1_at11/114+21724773..21727000F-box domain containing protein, expressed
LOC_Os04g35950NANA4+21728660..21734783retrotransposon protein, putative, unclassified

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.17518.1.S1_at--456--1311Chr04:21706528..21706552 (25 bp)
AGATGTTTCCTTGGATGCTCCTCAG
LOC_Os04g35910
Os.17518.1.S1_at--592--5231Chr04:21706453..21706477 (25 bp)
GAATACTCAACCAGCACAGATCACG
LOC_Os04g35910
Os.17518.1.S1_at--905--9931Chr04:21706336..21706360 (25 bp)
TACGAGGCAGAGATACTCACCGAGT
LOC_Os04g35910
Os.17518.1.S1_at--363--3751Chr04:21706321..21706345 (25 bp)
CTCACCGAGTTTTTTCTTATAGGCT
LOC_Os04g35910
Os.17518.1.S1_at--1052--6231Chr04:21706251..21706275 (25 bp)
GATGGATGGTTTCACCCTTCTAGCA
LOC_Os04g35910
Os.17518.1.S1_at--666--1811Chr04:21706238..21706262 (25 bp)
ACCCTTCTAGCATTTCCAGGAGATA
LOC_Os04g35910
Os.17518.1.S1_at--1133--6451Chr04:21706217..21706241 (25 bp)
GATAATCCCCTTGGTTTGATCTGCA
LOC_Os04g35910
Os.17518.1.S1_at--96--6351Chr04:21706191..21706215 (25 bp)
GATGCTCTACCTTGCTTGATCAAAA
LOC_Os04g35910
Os.17518.1.S1_at--463--5011Chr04:21706159..21706183 (25 bp)
GCAGGCAACCCTTCAACGTTAGAAT
LOC_Os04g35910
Os.17518.1.S1_at--445--5231Chr04:21706138..21706162 (25 bp)
GAATATCTCGTTCGGCTTTTCTGAA
LOC_Os04g35910
Os.17518.1.S1_at--429--6731Chr04:21706051..21706075 (25 bp)
GTTCTCATTCATGTATACCGTTGTA
LOC_Os04g35910
Target Sequence 
AGATGTTTCCTTGGATGCTCCTCAGACCCAGACACCAGAAAATACCCAACCAGCTCCTCAGACCCAGAATCCACAGAATA
CTCAACCAGCACAGATCACGGATGAACACTATAAGAGAAATGCTGATGCACTTGCTGCTGCCAGAGAAAGAGCTCTGGCG
CGGAAGAAAGCCAAAGCGCAGCAGATATGAAGTACGAGGCAGAGATACTCACCGAGTTTTTTCTTATAGGCTAAGGTCAT
CATATTCTTGTTTGAGGTTTCGGGAAGACTGTAAAATGATGGATGGTTTCACCCTTCTAGCATTTCCAGGAGATAATCCC
CTTGGTTTGATCTGCATGATGCTCTACCTTGCTTGATCAAAATATATGTGCAGGCAACCCTTCAACGTTAGAATATCTCG
TTCGGCTTTTCTGAACATTTGTTCTGCTGTAAGATGGGAAATAACTTAGCACAGTGAACTGAAGGTTGTATGCATATGTT
CTCATTCATGTATACCGTTGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.17518.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis