Browse Element(s) Details


Os.17560.1.A1_at

Description gb:AK061510.1
DB_XREF= gi:32971528
TID=Os.17560.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.17560 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:006-309-G01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:006-309-G01, full insert sequence.
FL= gb:AK061510.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g3680011/11Uncharacterised protein family containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g36760NANA7+22023107..22025397retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g36770NANA7+22027391..22033166retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os07g36780NANA7+22035466..22037940D-mannose binding lectin family protein, expressed
LOC_Os07g36790OsAffx.28784.1.S1_at11/117+22041765..22042016hypothetical protein
LOC_Os07g36800Os.17560.1.A1_at11/117+22044300..22046622Uncharacterised protein family containing protein, expressed
LOC_Os07g36810OsAffx.5551.1.S1_at11/117+22049643..22050308hypothetical protein
LOC_Os07g36820Os.38285.1.A1_at11/117+22054761..22058009Protein of unknown function, DUF614 containing protein, expressed
LOC_Os07g36830OsAffx.28785.1.S1_at10/117+22064721..22069602F-box domain containing protein

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Gene Ontology Classification
GO idTypeName
GO:0005739cellular_componentmitochondrion
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.17560.1.A1_at--893--4391Chr07:22045963..22045987 (25 bp)
GCCAAAGACCTGTTTTATGACTGTT
LOC_Os07g36800
Os.17560.1.A1_at--764--6631Chr07:22045985..22046009 (25 bp)
GTTGTACTTGGATAGACTGATTCAG
LOC_Os07g36800
Os.17560.1.A1_at--460--6671Chr07:22046035..22046059 (25 bp)
GTTGCAGATAAACTGGAACCTCTCC
LOC_Os07g36800
Os.17560.1.A1_at--814--2631Chr07:22046051..22046075 (25 bp)
AACCTCTCCAGCGTGAATGCTGCAA
LOC_Os07g36800
Os.17560.1.A1_at--504--5271Chr07:22046065..22046089 (25 bp)
GAATGCTGCAATGGCCGTGACAGGC
LOC_Os07g36800
Os.17560.1.A1_at--698--8691Chr07:22046091..22046115 (25 bp)
TGTGCCAGCTTTCCCGTAAGATAAG
LOC_Os07g36800
Os.17560.1.A1_at--299--2791Chr07:22046289..22046313 (25 bp)
AAGAGTGCTACTGCGTCGCTGGAAG
LOC_Os07g36800
Os.17560.1.A1_at--1084--10411Chr07:22046365..22046389 (25 bp)
TTATCAGTCGACCAGCACAGTGTTC
LOC_Os07g36800
Os.17560.1.A1_at--935--7451Chr07:22046399..22046423 (25 bp)
GTGTCCGCTTCCATGATAACAAATT
LOC_Os07g36800
Os.17560.1.A1_at--823--2571Chr07:22046528..22046552 (25 bp)
AACGGACTTGGTTTGAGTTCAGCTC
LOC_Os07g36800
Os.17560.1.A1_at--512--6071Chr07:22046542..22046566 (25 bp)
GAGTTCAGCTCGAAGTACACTCGAA
LOC_Os07g36800
Target Sequence 
GCCAAAGACCTGTTTTATGACTGTTGTACTTGGATAGACTGATTCAGATATCTGTTTTATGACTGTTGTATTGTTGCAGA
TAAACTGGAACCTCTCCAGCGTGAATGCTGCAATGGCCGTGACAGGCGTGTGCCAGCTTTCCCGTAAGATAAGGCACGAT
TACTTNTNTGATGAGAAGAGTGCTACTGCGTCGCTGGAAGGATGATAGGAAGAAGAAGAAATTGTTGTCATGGAATGGAA
CACTAATTTCATTATCAGTCGACCAGCACAGTGTTCACTGTGAANGTGTCCGCTTCCATGATAACAAATTAACAATCCCA
TGNGTGTGTATGATCATTATGAATTGGGCTATGGGTATGAAATGTTTTTATACCCTTTGGTATACAGATAGTAAGCGAGT
NTGAACTTAACTGAAACGGACTTGGTTTGAGTTCAGCTCGAAGTACACTCGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.17560.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis