Browse Element(s) Details


Os.38285.1.A1_at

Description gb:AK070185.1
DB_XREF= gi:32980209
TID=Os.38285.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.38285 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023045K20, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023045K20, full insert sequence.
FL= gb:AK070185.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g3682011/11Protein of unknown function, DUF614 containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g36770NANA7+22027391..22033166retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os07g36780NANA7+22035466..22037940D-mannose binding lectin family protein, expressed
LOC_Os07g36790OsAffx.28784.1.S1_at11/117+22041765..22042016hypothetical protein
LOC_Os07g36800Os.17560.1.A1_at11/117+22044300..22046622Uncharacterised protein family containing protein, expressed
LOC_Os07g36810OsAffx.5551.1.S1_at11/117+22049643..22050308hypothetical protein
LOC_Os07g36820Os.38285.1.A1_at11/117+22054761..22058009Protein of unknown function, DUF614 containing protein, expressed
LOC_Os07g36830OsAffx.28785.1.S1_at10/117+22064721..22069602F-box domain containing protein
LOC_Os07g36840OsAffx.5552.1.S1_at11/117+22072044..22073273F-box domain containing protein
LOC_Os07g36850NANA7+22074147..22075069transposon protein, putative, Pong sub-class
LOC_Os07g36860OsAffx.16590.1.S1_at11/117+22075496..22077485hypothetical protein
LOC_Os07g36870OsAffx.5553.1.S1_at11/117+22080910..22082154F-box domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.38285.1.A1_at--1128--351Chr07:22055334..22055358 (25 bp)
ATAATGTCCAGTGCGGTGTCTGGCA
LOC_Os07g36820
Os.38285.1.A1_at--362--7711Chr07:22055303..22055327 (25 bp)
GGGTGATACCATTTGTTTAGGAAGC
LOC_Os07g36820
Os.38285.1.A1_at--1145--5571Chr07:22055268..22055292 (25 bp)
GAAATAAGGCTTTTGCTGCTCTACA
LOC_Os07g36820
Os.38285.1.A1_at--623--10391Chr07:22055258..22055282 (25 bp)
TTTTGCTGCTCTACACAAGTCCTCT
LOC_Os07g36820
Os.38285.1.A1_at--156--2231Chr07:22055244..22055268 (25 bp)
ACAAGTCCTCTTTTGTGCCTATAAA
LOC_Os07g36820
Os.38285.1.A1_at--682--9811Chr07:22055223..22055247 (25 bp)
TAAAATCTCCTGAGGTGTGTGGCAT
LOC_Os07g36820
Os.38285.1.A1_at--891--7471Chr07:22055209..22055233 (25 bp)
GTGTGTGGCATGGACAGAACATCAA
LOC_Os07g36820
Os.38285.1.A1_at--857--6631Chr07:22055114..22055138 (25 bp)
GTTGTATTGCATATACCCTTTTGCA
LOC_Os07g36820
Os.38285.1.A1_at--476--8091Chr07:22055047..22055071 (25 bp)
GGACTGTCCGGCAAGAAAATAATCT
LOC_Os07g36820
Os.38285.1.A1_at--680--1971Chr07:22055020..22055044 (25 bp)
ACTGCAATTACAGGCCTGTTTGTTG
LOC_Os07g36820
Os.38285.1.A1_at--636--4471Chr07:22055007..22055031 (25 bp)
GCCTGTTTGTTGTATCAAGCCTGAA
LOC_Os07g36820
Target Sequence 
ATAATGTCCAGTGCGGTGTCTGGCATGGGCGGGGTGATACCATTTGTTTAGGAAGCANCGGTGAAGGAAATAAGGCTTTT
GCTGCTCTACACAAGTCCTCTTTTGTGCCTATAAAATCTCCTGAGGTGTGTGGCATGGACAGAACATCAAATGGTGCTAA
TGAGCATGANCCACTCGTCCCATCAGATCTACCAGANCAGTAGGATAATANCAGTTGNCAGTTGTATTGCATATACCCTT
TTGCACAAATTCGAATTGAAATGGTGAAAATTCTCAAGAGAATTGGTGGACTGTCCGGCAAGAAAATAATCTGTACTGCA
ATTACAGGCCTGTTTGTTGTATCAAGCCTGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.38285.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis