Browse Element(s) Details


OsAffx.5551.1.S1_at

Description tigr:9635.m03643
TID=OsAffx.5551.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g3681011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g36760NANA7+22023107..22025397retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g36770NANA7+22027391..22033166retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os07g36780NANA7+22035466..22037940D-mannose binding lectin family protein, expressed
LOC_Os07g36790OsAffx.28784.1.S1_at11/117+22041765..22042016hypothetical protein
LOC_Os07g36800Os.17560.1.A1_at11/117+22044300..22046622Uncharacterised protein family containing protein, expressed
LOC_Os07g36810OsAffx.5551.1.S1_at11/117+22049643..22050308hypothetical protein
LOC_Os07g36820Os.38285.1.A1_at11/117+22054761..22058009Protein of unknown function, DUF614 containing protein, expressed
LOC_Os07g36830OsAffx.28785.1.S1_at10/117+22064721..22069602F-box domain containing protein
LOC_Os07g36840OsAffx.5552.1.S1_at11/117+22072044..22073273F-box domain containing protein
LOC_Os07g36850NANA7+22074147..22075069transposon protein, putative, Pong sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.5551.1.S1_at--967--9391Chr07:22049757..22049781 (25 bp)
TCGTCGCTGCGGAGCAAGTTGTTTG
LOC_Os07g36810
OsAffx.5551.1.S1_at--255--8371Chr07:22049798..22049822 (25 bp)
GGCGGGCAGCAAGAAGTACTCTTCG
LOC_Os07g36810
OsAffx.5551.1.S1_at--536--3411Chr07:22049804..22049828 (25 bp)
CAGCAAGAAGTACTCTTCGGCGGCG
LOC_Os07g36810
OsAffx.5551.1.S1_at--921--4211Chr07:22050067..22050091 (25 bp)
CCGCGGTGATCGTGTGCCTCGTGAT
LOC_Os07g36810
OsAffx.5551.1.S1_at--685--8851Chr07:22050073..22050097 (25 bp)
TGATCGTGTGCCTCGTGATGGTGAT
LOC_Os07g36810
OsAffx.5551.1.S1_at--201--511Chr07:22050075..22050099 (25 bp)
ATCGTGTGCCTCGTGATGGTGATGC
LOC_Os07g36810
OsAffx.5551.1.S1_at--292--7471Chr07:22050078..22050102 (25 bp)
GTGTGCCTCGTGATGGTGATGCTCT
LOC_Os07g36810
OsAffx.5551.1.S1_at--271--9191Chr07:22050081..22050105 (25 bp)
TGCCTCGTGATGGTGATGCTCTGCG
LOC_Os07g36810
OsAffx.5551.1.S1_at--897--6331Chr07:22050095..22050119 (25 bp)
GATGCTCTGCGGCAGGGTCGGAGCC
LOC_Os07g36810
OsAffx.5551.1.S1_at--78--3371Chr07:22050208..22050232 (25 bp)
CACCGGAGCATGACTGGCCGTCGTC
LOC_Os07g36810
OsAffx.5551.1.S1_at--1110--9431Chr07:22050231..22050255 (25 bp)
TCGGCGACGGATCAGGAGACGACGA
LOC_Os07g36810
Target Sequence 
TCGTCGCTGCGGAGCAAGTTGTTTGGCGGTAGGACGACGAAGGCGGGCAGCAAGAAGTACTCTTCGGCGGCGGCGCTGGA
CGATGTCTACGACGCGGCGGAGTGGTCGTCGTCGTCGGTGCCGTGGTCCTCGACGTCGGCGCTGTCGCTGGACTCGGCGC
GCTCGTCGTCGTCGTCGTCGTCGACGACGACGACGGCGCCTTGCTCCCGCTCCCGCTCCTTGTCGTCGCTGTCGGACGCG
CTGTCTCCGCCTGCTGCGAGGCGCGCGCCGGAGAGGAGGGGGAGGACGCCGCGGCCGGCGGCGGGCGTGGCCGCGGTGAT
CGTGTGCCTCGTGATGGTGATGCTCTGCGGCAGGGTCGGAGCCACGGCGCTCGTCTCGGCGGCGTTCTACCTTTTCCCGC
GGCGGTGGCGGCCGGTGGGTGCCATCGAGGCGGCGGAGAGCGCGGCGGCGTCACCGGAGCATGACTGGCCGTCGTCGGCG
ACGGATCAGGAGACGACGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.5551.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis