Browse Element(s) Details


OsAffx.5552.1.S1_at

Description tigr:9635.m03646
TID=OsAffx.5552.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=AC074283 Hypothetical protein, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g3684011/11F-box domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g36810OsAffx.5551.1.S1_at11/117+22049643..22050308hypothetical protein
LOC_Os07g36820Os.38285.1.A1_at11/117+22054761..22058009Protein of unknown function, DUF614 containing protein, expressed
LOC_Os07g36830OsAffx.28785.1.S1_at10/117+22064721..22069602F-box domain containing protein
LOC_Os07g36840OsAffx.5552.1.S1_at11/117+22072044..22073273F-box domain containing protein
LOC_Os07g36850NANA7+22074147..22075069transposon protein, putative, Pong sub-class
LOC_Os07g36860OsAffx.16590.1.S1_at11/117+22075496..22077485hypothetical protein
LOC_Os07g36870OsAffx.5553.1.S1_at11/117+22080910..22082154F-box domain containing protein, expressed
LOC_Os07g36880Os.53498.1.S1_at11/117+22086306..22088716F-box domain containing protein, expressed
LOC_Os07g36890OsAffx.28786.1.S1_at11/117+22089230..22091643F-box domain containing protein
LOC_Os07g36900OsAffx.5554.1.S1_at11/117+22093436..22097583F-box domain containing protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.5552.1.S1_at--663--3611Chr07:22072466..22072490 (25 bp)
CTTGTGCTCGACATGCGTAGGATGG
LOC_Os07g36840
OsAffx.5552.1.S1_at--215--6251Chr07:22072446..22072470 (25 bp)
GATGGATTTCTCAGTTCTCGAGCTC
LOC_Os07g36840
OsAffx.5552.1.S1_at--623--4551Chr07:22072412..22072436 (25 bp)
GCGCCTGGCCATGACATTGTGGAAT
LOC_Os07g36840
OsAffx.5552.1.S1_at--808--6691Chr07:22072350..22072374 (25 bp)
GTTCGCTTTCCGTAATTACATCGCA
LOC_Os07g36840
OsAffx.5552.1.S1_at--120--931Chr07:22072326..22072350 (25 bp)
AGGCTATGCACTCCAGATCTATTCT
LOC_Os07g36840
OsAffx.5552.1.S1_at--132--10411Chr07:22072257..22072281 (25 bp)
TTTTGAGACTGCCATGGTCGTGCCT
LOC_Os07g36840
OsAffx.5552.1.S1_at--871--5771Chr07:22072229..22072253 (25 bp)
GACGAATTCGGCATCCTGGGTGCGA
LOC_Os07g36840
OsAffx.5552.1.S1_at--34--7311Chr07:22072210..22072234 (25 bp)
GTGCGACCAGCAGGGAGTTGTTCTT
LOC_Os07g36840
OsAffx.5552.1.S1_at--1066--6631Chr07:22072194..22072218 (25 bp)
GTTGTTCTTGAAAGTTCCTCCGAGT
LOC_Os07g36840
OsAffx.5552.1.S1_at--814--5171Chr07:22072123..22072147 (25 bp)
GCAAGTATCTTGAGTCTGTCCGTAG
LOC_Os07g36840
OsAffx.5552.1.S1_at--853--4731Chr07:22072074..22072098 (25 bp)
GCTGTCATTCCTGTATGTTGGCTAC
LOC_Os07g36840
Target Sequence 
CTTGTGCTCGACATGCGTAGGATGGATTTCTCAGTTCTCGAGCTCCCATCGAGCGCGCCTGGCCATGACATTGTGGAATG
CGCCATCGTAGAGGAAGGAGAAGGCAAGATTGGGATGTTCGCTTTCCGTAATTACATCGCAGGCTATGCACTCCAGATCT
ATTCTGCAAAGATGCAAAATGAAGGGAAAGCTGCTGCCGGCAAATGGAGTTTTGAGACTGCCATGGTCGTGCCTTTCGAC
GAATTCGGCATCCTGGGTGCGACCAGCAGGGAGTTGTTCTTGAAAGTTCCTCCGAGTTTCGCGCGCGGGTGCTATTCGCT
GGAGTTCAGCACAAACCCAAGTTGCAAGTATCTTGAGTCTGTCCGTAGGGTGATCAGTGGTGTTCCACCTTCGCTGTCAT
TCCTGTATGTTGGCTAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.5552.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis