Browse Element(s) Details


OsAffx.5554.1.S1_at

Description tigr:9635.m03653
TID=OsAffx.5554.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=F-box domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g3690011/11F-box domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g36830OsAffx.28785.1.S1_at10/117+22064721..22069602F-box domain containing protein
LOC_Os07g36840OsAffx.5552.1.S1_at11/117+22072044..22073273F-box domain containing protein
LOC_Os07g36850NANA7+22074147..22075069transposon protein, putative, Pong sub-class
LOC_Os07g36860OsAffx.16590.1.S1_at11/117+22075496..22077485hypothetical protein
LOC_Os07g36870OsAffx.5553.1.S1_at11/117+22080910..22082154F-box domain containing protein, expressed
LOC_Os07g36880Os.53498.1.S1_at11/117+22086306..22088716F-box domain containing protein, expressed
LOC_Os07g36890OsAffx.28786.1.S1_at11/117+22089230..22091643F-box domain containing protein
LOC_Os07g36900OsAffx.5554.1.S1_at11/117+22093436..22097583F-box domain containing protein
LOC_Os07g36910Os.22823.1.A1_at11/117+22100223..22103458F-box domain containing protein, expressed
LOC_Os07g36920Os.16363.1.S1_at11/117+22105972..22108442F-box domain containing protein, expressed
LOC_Os07g36930Os.51668.1.S1_at10/117+22109132..22111980expressed protein
LOC_Os07g36940Os.15271.1.S3_s_at11/117+22113267..22121435MIF4G domain containing protein, expressed
LOC_Os07g36940Os.15271.1.S2_s_at11/117+22113267..22121435MIF4G domain containing protein, expressed
LOC_Os07g36940Os.15271.1.S1_s_at11/117+22113267..22121435MIF4G domain containing protein, expressed
LOC_Os07g36940Os.15271.1.S4_at11/117+22113267..22121435MIF4G domain containing protein, expressed
LOC_Os07g36940Os.51591.1.S1_at2/117+22113267..22121435MIF4G domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.5554.1.S1_at--23--8531Chr07:22095039..22095063 (25 bp)
TGGAGCATGCGTGCCTGGATTACGA
LOC_Os07g36900
OsAffx.5554.1.S1_at--62--4951Chr07:22094937..22094961 (25 bp)
GCATTGTGCTTAACACTTATCGGTT
LOC_Os07g36900
OsAffx.5554.1.S1_at--1126--9731Chr07:22094802..22094826 (25 bp)
TAATTCCAGAAGTTGTTCCCACGCC
LOC_Os07g36900
OsAffx.5554.1.S1_at--1158--9311Chr07:22094786..22094810 (25 bp)
TCCCACGCCATTTAAGAACCTCAAA
LOC_Os07g36900
OsAffx.5554.1.S1_at--173--5431Chr07:22094771..22094795 (25 bp)
GAACCTCAAAAGTCTCACGCTGGGT
LOC_Os07g36900
OsAffx.5554.1.S1_at--735--2071Chr07:22094724..22094748 (25 bp)
ACATTGGTTGGGTAACTATGCTGCT
LOC_Os07g36900
OsAffx.5554.1.S1_at--565--3911Chr07:22094701..22094725 (25 bp)
CTGGAGGTGGCACCTGTCCTTGAAA
LOC_Os07g36900
OsAffx.5554.1.S1_at--101--1391Chr07:22093572..22093596 (25 bp)
AGACCATGACGTTTTCCCGTGGATC
LOC_Os07g36900
OsAffx.5554.1.S1_at--722--7111Chr07:22093530..22093554 (25 bp)
GTCAGACCGCTCAGTACGTTGAGGC
LOC_Os07g36900
OsAffx.5554.1.S1_at--736--5071Chr07:22093484..22093508 (25 bp)
GCAGCGATCTGCTATCACACGGCGG
LOC_Os07g36900
OsAffx.5554.1.S1_at--150--3311Chr07:22093469..22093493 (25 bp)
CACACGGCGGCTTGAGACATGCAAT
LOC_Os07g36900
Target Sequence 
TGGAGCATGCGTGCCTGGATTACGAAGGTAGAAGGGACGGTGAATCTGTCAAGTATATTTTAGGGAAGTTGTCTCAAGAC
TTTTCCCTACTTACAAGCTTAAGCATTGTGCTTAACACTTATCGGTTGAAGAATCCAGTAATTCCAGAAGTTGTTCCCAC
GCCATTTAAGAACCTCAAAAGTCTCACGCTGGGTGCGATAATGCACTGTAACGATGACATTGGTTGGGTAACTATGCTGC
TGGAGGTGGCACCTGTCCTTGAAAGTTTTCAGATAGAACTTCTTACCAACGAGAAACGAGAACACCCAGGCGGCGTTCTG
TGGGAGCCATCAGACAACGCGCACCGTCATCTGAGGCAGGTGAAGTTCTACCGCTTCAGGATGAGACAGGCTGATGTTGC
GCTGGCAGGGTTGCTTCTGGCAAGAGCCCCATTGCTGCAGACCATGACGTTTTCCCGTGGATCTGTTCATCGCTCTCCCG
GTCAGACCGCTCAGTACGTTGAGGCCGCCGCCGACTGGACCGCGGAGCAGCGATCTGCTATCACACGGCGGCTTGAGACA
TGCAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.5554.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis