Browse Element(s) Details


Os.22823.1.A1_at

Description gb:AK071294.1
DB_XREF= gi:32981317
TID=Os.22823.1
CNT=9
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.22823 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023084I19, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023084I19, full insert sequence.
FL= gb:AK069991.1 gb:AK071294.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g3691011/11F-box domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g36860OsAffx.16590.1.S1_at11/117+22075496..22077485hypothetical protein
LOC_Os07g36870OsAffx.5553.1.S1_at11/117+22080910..22082154F-box domain containing protein, expressed
LOC_Os07g36880Os.53498.1.S1_at11/117+22086306..22088716F-box domain containing protein, expressed
LOC_Os07g36890OsAffx.28786.1.S1_at11/117+22089230..22091643F-box domain containing protein
LOC_Os07g36900OsAffx.5554.1.S1_at11/117+22093436..22097583F-box domain containing protein
LOC_Os07g36910Os.22823.1.A1_at11/117+22100223..22103458F-box domain containing protein, expressed
LOC_Os07g36920Os.16363.1.S1_at11/117+22105972..22108442F-box domain containing protein, expressed
LOC_Os07g36930Os.51668.1.S1_at10/117+22109132..22111980expressed protein
LOC_Os07g36940Os.15271.1.S3_s_at11/117+22113267..22121435MIF4G domain containing protein, expressed
LOC_Os07g36940Os.15271.1.S2_s_at11/117+22113267..22121435MIF4G domain containing protein, expressed
LOC_Os07g36940Os.15271.1.S1_s_at11/117+22113267..22121435MIF4G domain containing protein, expressed
LOC_Os07g36940Os.15271.1.S4_at11/117+22113267..22121435MIF4G domain containing protein, expressed
LOC_Os07g36940Os.51591.1.S1_at2/117+22113267..22121435MIF4G domain containing protein, expressed
LOC_Os07g36950Os.53168.1.S2_at11/117+22123524..22126229expressed protein
LOC_Os07g36950Os.53168.1.S1_at11/117+22123524..22126229expressed protein
LOC_Os07g36960Os.53138.1.S1_at11/117+22126808..22128704expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.22823.1.A1_at--1138--4831Chr07:22102867..22102891 (25 bp)
GCTAAGTACTTCACGTTACCTGTCA
LOC_Os07g36910
Os.22823.1.A1_at--557--4031Chr07:22102951..22102975 (25 bp)
CGTTGTGTTTCGATCTAAGCTGCTT
LOC_Os07g36910
Os.22823.1.A1_at--857--10551Chr07:22103018..22103042 (25 bp)
TTCTTCTGAACGCTGATATGCACTG
LOC_Os07g36910
Os.22823.1.A1_at--392--711Chr07:22103043..22103067 (25 bp)
ATGATGCGAATGCTGTGCTGGTATT
LOC_Os07g36910
Os.22823.1.A1_at--350--1371Chr07:22103074..22103098 (25 bp)
AGAGCTCTGGTCCATTTCCAAGCTA
LOC_Os07g36910
Os.22823.1.A1_at--656--5911Chr07:22103113..22103137 (25 bp)
GAGCTCAGAGTTTCCATTAGATATC
LOC_Os07g36910
Os.22823.1.A1_at--284--10151Chr07:22103141..22103165 (25 bp)
TATCTAACTACCTCACTTCTTTTGG
LOC_Os07g36910
Os.22823.1.A1_at--359--5951Chr07:22103167..22103191 (25 bp)
GAGCAAATCGCTTCCTAGTTTTGTT
LOC_Os07g36910
Os.22823.1.A1_at--670--8151Chr07:22103235..22103259 (25 bp)
GGAAATCACGGTTCATCTCTAGAAG
LOC_Os07g36910
Os.22823.1.A1_at--1025--10111Chr07:22103290..22103314 (25 bp)
TATGATCTTGATCCCACGGCTCGTA
LOC_Os07g36910
Os.22823.1.A1_at--456--3091Chr07:22103399..22103423 (25 bp)
AATACTTACGAGTTTGCATTCCAGA
LOC_Os07g36910
Target Sequence 
GCTAAGTACTTCACGTTACCTGTCAAACACTTGTTAAGCACTAATCCATGGCTAGGTATATTTACCAGACTTATAATACA
CTTTCGTTGTGTTTCGATCTAAGCTGCTTGCTAGGTACTAGCTAGCTTATTATGTTATCAAACTATTTTCTTTCTTCTGA
ACGCTGATATGCACTGATGATGCGAATGCTGTGCTGGTATTCGTAGCAGAGCTCTGGTCCATTTCCAAGCTAATGTGCTG
CGTGTGGAGCTCAGAGTTTCCATTAGATATCTGGTATCTAACTACCTCACTTCTTTTGGTGAGCAAATCGCTTCCTAGTT
TTGTTTTATTGCTTCTTTCTGCTGCAATTAGATGTCTGTGTCCAAATAGGAAATCACGGTTCATCTCTAGAAGAATTTCA
GCCAGAAGATGTGTAAATGTTGCTATGATCTTGATCCCACGGCTCGTACAAATTTCTTGATCGGGAGATTCATGTTACAC
CAGTAATATATGCTTCGTTACATCTGGGGATAAAAAAAAAGAGAGGAGAGATAATACTTACGAGTTTGCATTCCAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.22823.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis