Browse Element(s) Details


Os.53168.1.S1_at

Description gb:AK071161.1
DB_XREF= gi:32981184
TID=Os.53168.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53168 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-113-B05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023082J02, full insert sequence.
FL= gb:AK071161.1 gb:AK106624.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g3695011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g36910Os.22823.1.A1_at11/117+22100223..22103458F-box domain containing protein, expressed
LOC_Os07g36920Os.16363.1.S1_at11/117+22105972..22108442F-box domain containing protein, expressed
LOC_Os07g36930Os.51668.1.S1_at10/117+22109132..22111980expressed protein
LOC_Os07g36940Os.15271.1.S3_s_at11/117+22113267..22121435MIF4G domain containing protein, expressed
LOC_Os07g36940Os.15271.1.S2_s_at11/117+22113267..22121435MIF4G domain containing protein, expressed
LOC_Os07g36940Os.15271.1.S1_s_at11/117+22113267..22121435MIF4G domain containing protein, expressed
LOC_Os07g36940Os.15271.1.S4_at11/117+22113267..22121435MIF4G domain containing protein, expressed
LOC_Os07g36940Os.51591.1.S1_at2/117+22113267..22121435MIF4G domain containing protein, expressed
LOC_Os07g36950Os.53168.1.S2_at11/117+22123524..22126229expressed protein
LOC_Os07g36950Os.53168.1.S1_at11/117+22123524..22126229expressed protein
LOC_Os07g36960Os.53138.1.S1_at11/117+22126808..22128704expressed protein
LOC_Os07g36970OsAffx.29313.1.S1_at1/117+22129943..22132080hypothetical protein
LOC_Os07g36980OsAffx.5555.1.S1_at11/117+22139063..22140237protein kinase family protein, putative
LOC_Os07g36980Os.12664.1.S1_at1/117+22139063..22140237protein kinase family protein, putative

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53168.1.S1_at--213--6391Chr07:22124355..22124379 (25 bp)
GATCGAGACTTTGCTATTCTGGAGA
LOC_Os07g36950
Os.53168.1.S1_at--103--5671Chr07:22124388..22124412 (25 bp)
GACATGATTGGAGCATTCTGCCTGA
LOC_Os07g36950
Os.53168.1.S1_at--712--5691Chr07:22124418..22124442 (25 bp)
GACTTATCCGGAAGAACTCACCTCT
LOC_Os07g36950
Os.53168.1.S1_at--754--5471Chr07:22124431..22124455 (25 bp)
GAACTCACCTCTGTTATGGGACTAG
LOC_Os07g36950
Os.53168.1.S1_at--972--6331Chr07:22124463..22124487 (25 bp)
GATGCTGATTTTGCCGATAGTCCAC
LOC_Os07g36950
Os.53168.1.S1_at--478--6491Chr07:22124478..22124502 (25 bp)
GATAGTCCACCGTTGAACTTAGACA
LOC_Os07g36950
Os.53168.1.S1_at--756--10711Chr07:22124567..22124591 (25 bp)
TTGCTCTTGCAAGGGCGGCGACTAC
LOC_Os07g36950
Os.53168.1.S1_at--54--1271Chr07:22124709..22124733 (25 bp)
AGATATATACCAGTTTCCCACCATC
LOC_Os07g36950
Os.53168.1.S1_at--180--571Chr07:22124731..22124755 (25 bp)
ATCCTTGTCACTGCCAAGTCTGAAT
LOC_Os07g36950
Os.53168.1.S1_at--1067--6451Chr07:22124847..22124871 (25 bp)
GATAAAGTGTTTACCTTCCTGGTTG
LOC_Os07g36950
Os.53168.1.S1_at--518--10711Chr07:22124890..22124914 (25 bp)
TTGCTGTGCCAAAATGACCTCATAT
LOC_Os07g36950
Target Sequence 
GATCGAGACTTTGCTATTCTGGAGACAGAGGAAGACATGATTGGAGCATTCTGCCTGAAGGGAGACTTATCCGGAAGAAC
TCACCTCTGTTATGGGACTAGGCGAATCGATGCTGATTTTGCCGATAGTCCACCGTTGAACTTAGACAAGACAATCCCCT
TGCCCTTGCCCTTGGATCATTGCTATCACATTATAAATGCAACCCAGGATACTTGCTCTTGCAAGGGCGGCGACTACACT
CGTCCAGACGCACTACGGAGGAGGATGATACAGATATGCTATATTTCACATTGGAGCCCAAAACAATGCTTCTCGAGAAG
GTTTGCGGAATGAGTAGACCAAATGTCACTGCAAAGATATATACCAGTTTCCCACCATCCTTGTCACTGCCAAGTCTGAA
TACTGAATATGGTAAGCTTTTTATTATAGCATCAGTAACATCTTGCCAAGTCTGGCCTTGGGGATCNGCTCTTGTGATGT
GGATTCAATGTTGATAAAGTGTTTACCTTCCTGGTTGTTCCCGGATTGCTGGTTTTTGCTGTGCCAAAATGACCTCATAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53168.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis