Browse Element(s) Details


Os.53138.1.S1_at

Description gb:AK070977.1
DB_XREF= gi:32981000
TID=Os.53138.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53138 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023072E20, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023072E20, full insert sequence.
FL= gb:AK070977.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g3696011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g36910Os.22823.1.A1_at11/117+22100223..22103458F-box domain containing protein, expressed
LOC_Os07g36920Os.16363.1.S1_at11/117+22105972..22108442F-box domain containing protein, expressed
LOC_Os07g36930Os.51668.1.S1_at10/117+22109132..22111980expressed protein
LOC_Os07g36940Os.15271.1.S3_s_at11/117+22113267..22121435MIF4G domain containing protein, expressed
LOC_Os07g36940Os.15271.1.S2_s_at11/117+22113267..22121435MIF4G domain containing protein, expressed
LOC_Os07g36940Os.15271.1.S1_s_at11/117+22113267..22121435MIF4G domain containing protein, expressed
LOC_Os07g36940Os.15271.1.S4_at11/117+22113267..22121435MIF4G domain containing protein, expressed
LOC_Os07g36940Os.51591.1.S1_at2/117+22113267..22121435MIF4G domain containing protein, expressed
LOC_Os07g36950Os.53168.1.S2_at11/117+22123524..22126229expressed protein
LOC_Os07g36950Os.53168.1.S1_at11/117+22123524..22126229expressed protein
LOC_Os07g36960Os.53138.1.S1_at11/117+22126808..22128704expressed protein
LOC_Os07g36970OsAffx.29313.1.S1_at1/117+22129943..22132080hypothetical protein
LOC_Os07g36980OsAffx.5555.1.S1_at11/117+22139063..22140237protein kinase family protein, putative
LOC_Os07g36980Os.12664.1.S1_at1/117+22139063..22140237protein kinase family protein, putative

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53138.1.S1_at--613--5451Chr07:22128124..22128148 (25 bp)
GAACGTCCAATTACCGCTGCAAAGA
LOC_Os07g36960
Os.53138.1.S1_at--899--1251Chr07:22128146..22128170 (25 bp)
AGATATATACCGGTTTTCCGCCATC
LOC_Os07g36960
Os.53138.1.S1_at--179--571Chr07:22128168..22128192 (25 bp)
ATCCTTATCACCGTCAAGTCTATGA
LOC_Os07g36960
Os.53138.1.S1_at--504--3691Chr07:22128221..22128245 (25 bp)
CTATTTGTGTTTTACTGGCCTTGGG
LOC_Os07g36960
Os.53138.1.S1_at--882--1351Chr07:22128425..22128449 (25 bp)
AGAGCAGCACTGGTTATCAATATTG
LOC_Os07g36960
Os.53138.1.S1_at--204--371Chr07:22128440..22128464 (25 bp)
ATCAATATTGCTCTCATTGCTCAGG
LOC_Os07g36960
Os.53138.1.S1_at--98--71Chr07:22128455..22128479 (25 bp)
ATTGCTCAGGAACGCCGTTGACTAC
LOC_Os07g36960
Os.53138.1.S1_at--188--8871Chr07:22128581..22128605 (25 bp)
TGATGCATTCTTGGCTATTTGGTTG
LOC_Os07g36960
Os.53138.1.S1_at--849--8571Chr07:22128600..22128624 (25 bp)
TGGTTGCAAGTCAGGAGGCTCTTTC
LOC_Os07g36960
Os.53138.1.S1_at--287--6211Chr07:22128614..22128638 (25 bp)
GAGGCTCTTTCTGATGTAAGCTGTA
LOC_Os07g36960
Os.53138.1.S1_at--180--4871Chr07:22128655..22128679 (25 bp)
GCTAGTGGAGCTTTGCAGGTTTGTC
LOC_Os07g36960
Target Sequence 
GAACGTCCAATTACCGCTGCAAAGATATATACCGGTTTTCCGCCATCCTTATCACCGTCAAGTCTATGAATATGGTAAGC
TTATTAGAATTGCATTGCTATTTGTGTTTTACTGGCCTTGGGGATCAGCTATTATGATGTGGATTCTATGTTGAGGAACA
TAAATTCTGTGTGATTGTTTTTCAAAATGATTTGGCCATTATGTGGGTTTCTTGTTTTGATGGAATCTCTCGGTAATTGT
AATACTACATAATTCTGTATACAGGCTTTTTGGCATGATGATAGGGACATCGAAAGGGGACAGAGCAGCACTGGTTATCA
ATATTGCTCTCATTGCTCAGGAACGCCGTTGACTACATCAAGCTACAACTGATAGTGGTGGCATCTATGTAATTTTTCAA
CAGTAATCTAGTTTGTTTCTGTAGTATTGTTCCACTTTTAAGTTTTAGCCCTTATGATGATGCATTCTTGGCTATTTGGT
TGCAAGTCAGGAGGCTCTTTCTGATGTAAGCTGTATTATACTTGACTAGTGGCTAGTGGAGCTTTGCAGGTTTGTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53138.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis