Browse Element(s) Details


Os.53168.1.S2_at

Description gb:AK106624.1
DB_XREF= gi:32991833
TID=Os.53168.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53168 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-113-B05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-113-B05, full insert sequence.
FL= gb:AK071161.1 gb:AK106624.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g3695011/11expressed protein
LOC_Os11g197301/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g36910Os.22823.1.A1_at11/117+22100223..22103458F-box domain containing protein, expressed
LOC_Os07g36920Os.16363.1.S1_at11/117+22105972..22108442F-box domain containing protein, expressed
LOC_Os07g36930Os.51668.1.S1_at10/117+22109132..22111980expressed protein
LOC_Os07g36940Os.15271.1.S3_s_at11/117+22113267..22121435MIF4G domain containing protein, expressed
LOC_Os07g36940Os.15271.1.S2_s_at11/117+22113267..22121435MIF4G domain containing protein, expressed
LOC_Os07g36940Os.15271.1.S1_s_at11/117+22113267..22121435MIF4G domain containing protein, expressed
LOC_Os07g36940Os.15271.1.S4_at11/117+22113267..22121435MIF4G domain containing protein, expressed
LOC_Os07g36940Os.51591.1.S1_at2/117+22113267..22121435MIF4G domain containing protein, expressed
LOC_Os07g36950Os.53168.1.S2_at11/117+22123524..22126229expressed protein
LOC_Os07g36950Os.53168.1.S1_at11/117+22123524..22126229expressed protein
LOC_Os07g36960Os.53138.1.S1_at11/117+22126808..22128704expressed protein
LOC_Os07g36970OsAffx.29313.1.S1_at1/117+22129943..22132080hypothetical protein
LOC_Os07g36980OsAffx.5555.1.S1_at11/117+22139063..22140237protein kinase family protein, putative
LOC_Os07g36980Os.12664.1.S1_at1/117+22139063..22140237protein kinase family protein, putative

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Gene Ontology Classification
GO idTypeName
GO:0006396biological_processRNA processing
GO:0000175molecular_function3'-5'-exoribonuclease activity
GO:0003723molecular_functionRNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53168.1.S2_at--636--9871Chr07:22125666..22125690 (25 bp)
TACTTTTAGGTCTGTGGCTTTGCTT
LOC_Os07g36950
Os.53168.1.S2_at--251--8291Chr07:22125681..22125705 (25 bp)
GGCTTTGCTTACCAGATTTATAGTC
LOC_Os07g36950
Os.53168.1.S2_at--832--10711Chr07:22125786..22125810 (25 bp)
TTGCATGTACCATGTACACCCTTGG
LOC_Os07g36950
Os.53168.1.S2_at--1001--6071Chr07:22125885..22125909 (25 bp)
GAGTATAATCACGTTATCCTCCGGC
LOC_Os07g36950
Os.53168.1.S2_at--144--571Chr07:22125900..22125924 (25 bp)
ATCCTCCGGCATGATGAATATCTGG
LOC_Os07g36950
Os.53168.1.S2_at--428--2091Chr07:22126007..22126031 (25 bp)
ACATGAAGCTACAACTGACGGTGGT
LOC_Os07g36950
Os.53168.1.S2_at--788--5751Chr07:22126023..22126047 (25 bp)
GACGGTGGTGGCATCTATCAGTATT
LOC_Os07g36950
Os.53168.1.S2_at--1046--10072Chr11:11351778..11351909 (24 bp)
TAGGTAGTCCTATTCCACTTTTAGC
LOC_Os11g19730
Os.53168.1.S2_at--707--3671Chr07:22126093..22126117 (25 bp)
CTTTTAGCCCTTGTGATGTATTTTT
LOC_Os07g36950
Os.53168.1.S2_at--235--7091Chr07:22126132..22126156 (25 bp)
GTCAAGTCAGGCAGATCGTGGCTTT
LOC_Os07g36950
Os.53168.1.S2_at--225--1291Chr07:22126144..22126168 (25 bp)
AGATCGTGGCTTTTGGAGCTTTTCA
LOC_Os07g36950
Target Sequence 
TACTTTTAGGTCTGTGGCTTTGCTTACCAGATTTATAGTCTATGTCATGTTTTATCTGAAAATACATTCAAAGTGATTTT
TTTCAAAATGAATTGGCCATCATGGTTTTTGTATCTGGTTTTGCATGTACCATGTACACCCTTGGTCCCAAAAAAAAAAA
AAACCAATCCTAGCTAGAATTGGTTTTTTATGGGAAGGAGGGAGTAGCTATCATTTATAGAGTATAATCACGTTATCCTC
CGGCATGATGAATATCTGGTTTTTTTCTGTATGACTGTATGTAGGCTTGTTTGGTTCAATGAGAAGGAGTGCTCAGGAGC
CAGGAAGGAATATCTTGGTAGACATGAAGCTACAACTGACGGTGGTGGCATCTATCAGTATTAGTTTGTTCAAACGTTGT
CTAGTTTGTTTAGGTAGTCCTATTCCACTTTTAGCCCTTGTGATGTATTTTTGTATTTGGTTGCAAGTCAAGTCAGGCAG
ATCGTGGCTTTTGGAGCTTTTCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53168.1.S2_at     

Putative homologies in rice

Putative homologies in arabidopsis