Browse Element(s) Details


Os.17604.1.S1_at

Description gb:AK063810.1
DB_XREF= gi:32973828
TID=Os.17604.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.17604 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033052N08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-121-G09, full insert sequence.
FL= gb:AK073644.1 gb:AK063810.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g1123011/11Serine/threonine protein phosphatase PP-X isozyme 2, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g11200OsAffx.6231.1.S1_at11/119+6207946..6208227hypothetical protein
LOC_Os09g11210OsAffx.17641.1.S1_at11/119+6211043..6211517hypothetical protein
LOC_Os09g11220OsAffx.6468.1.S1_at8/119+6217761..6224987retrotransposon protein, putative, unclassified, expressed
LOC_Os09g11220OsAffx.6468.1.S1_x_at4/119+6217761..6224987retrotransposon protein, putative, unclassified, expressed
LOC_Os09g11230Os.17604.1.S1_at11/119+6232897..6237918Serine/threonine protein phosphatase PP-X isozyme 2, putative, expressed
LOC_Os09g11230OsAffx.6232.1.S1_s_at10/119+6232897..6237918Serine/threonine protein phosphatase PP-X isozyme 2, putative, expressed
LOC_Os09g11230OsAffx.6232.1.S1_at2/119+6232897..6237918Serine/threonine protein phosphatase PP-X isozyme 2, putative, expressed
LOC_Os09g11240Os.7219.1.S1_at11/119+6242180..6244884expressed protein
LOC_Os09g11250Os.24787.1.S1_at8/119+6245257..6248737co-chaperone GrpE family protein, expressed
LOC_Os09g11260OsAffx.29802.1.S1_at10/119+6249839..6250492hypothetical protein
LOC_Os09g11270Os.11452.1.S1_at11/119+6250864..6259438enhancer of polycomb, putative, expressed
LOC_Os09g11280OsAffx.17642.1.S1_at8/119+6261724..6262591hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006470biological_processprotein amino acid dephosphorylation
GO:0000159cellular_componentprotein phosphatase type 2A complex
GO:0005634cellular_componentnucleus
GO:0005730cellular_componentnucleolus
GO:0005737cellular_componentcytoplasm
GO:0000158molecular_functionprotein phosphatase type 2A activity
GO:0004722molecular_functionprotein serine/threonine phosphatase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.17604.1.S1_at--951--10511Chr09:6237461..6237485 (25 bp)
TTCAGCAGTGGGTACAGCGTATCCT
LOC_Os09g11230
Os.17604.1.S1_at--1142--1631Chr09:6237476..6237500 (25 bp)
AGCGTATCCTGCAAACAAGCACCGG
LOC_Os09g11230
Os.17604.1.S1_at--596--131Chr09:6237504..6237528 (25 bp)
ATTAAGTCTTGCGAGCTCCCATTTT
LOC_Os09g11230
Os.17604.1.S1_at--907--4611Chr09:6237514..6237538 (25 bp)
GCGAGCTCCCATTTTCTGAGATGAG
LOC_Os09g11230
Os.17604.1.S1_at--502--5912Chr09:6237541..6237565 (25 bp)
GAGCTCATGCTTTACAAGACTCTTA
LOC_Os09g11230
Os.17604.1.S1_at--160--4431Chr09:6237567..6237591 (25 bp)
GCCAGGAGTGCTTTCGAGATGTATA
LOC_Os09g11230
Os.17604.1.S1_at--463--3131Chr09:6237592..6237616 (25 bp)
AATTGATTTTATGTCCCCAGTCCTA
LOC_Os09g11230
Os.17604.1.S1_at--134--8711Chr09:6237603..6237627 (25 bp)
TGTCCCCAGTCCTATCATTTGTAAG
LOC_Os09g11230
Os.17604.1.S1_at--1064--8731Chr09:6237682..6237706 (25 bp)
TGTAGATGAGGCCACTCCTTTGATT
LOC_Os09g11230
Os.17604.1.S1_at--451--4311Chr09:6237698..6237722 (25 bp)
CCTTTGATTCCATGGGTGTGCGTTG
LOC_Os09g11230
Os.17604.1.S1_at--881--7731Chr09:6237712..6237736 (25 bp)
GGTGTGCGTTGGTCCATGATGTAAA
LOC_Os09g11230
Target Sequence 
TTCAGCAGTGGGTACAGCGTATCCTGCAAACAAGCACCGGCNGATTAAGTCTTGCGAGCTCCCATTTTCTGAGATGAGNN
NNNCTGAGCTCATGCTTTACAAGACTCTTAAGCCAGGAGTGCTTTCGAGATGTATAAATTGATTTTATGTCCCCAGTCCT
ATCATTTGTAAGCCAAGAGAGTGGCTCACATTTGAGCTTGAGAAAATGCCCCTGTGAAGGGAGTGGTGTAGATGAGGCCA
CTCCTTTGATTCCATGGGTGTGCGTTGGTCCATGATGTAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.17604.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis