Browse Element(s) Details


OsAffx.17642.1.S1_at

Description tigr:9637.m00853
TID=OsAffx.17642.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g112808/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g11230Os.17604.1.S1_at11/119+6232897..6237918Serine/threonine protein phosphatase PP-X isozyme 2, putative, expressed
LOC_Os09g11230OsAffx.6232.1.S1_s_at10/119+6232897..6237918Serine/threonine protein phosphatase PP-X isozyme 2, putative, expressed
LOC_Os09g11230OsAffx.6232.1.S1_at2/119+6232897..6237918Serine/threonine protein phosphatase PP-X isozyme 2, putative, expressed
LOC_Os09g11240Os.7219.1.S1_at11/119+6242180..6244884expressed protein
LOC_Os09g11250Os.24787.1.S1_at8/119+6245257..6248737co-chaperone GrpE family protein, expressed
LOC_Os09g11260OsAffx.29802.1.S1_at10/119+6249839..6250492hypothetical protein
LOC_Os09g11270Os.11452.1.S1_at11/119+6250864..6259438enhancer of polycomb, putative, expressed
LOC_Os09g11280OsAffx.17642.1.S1_at8/119+6261724..6262591hypothetical protein
LOC_Os09g11290OsAffx.17643.1.S1_x_at11/119+6265198..6265539Indole-3-acetate beta-glucosyltransferase, putative
LOC_Os09g11300OsAffx.6233.1.S1_at8/119+6270930..6273949hypothetical protein
LOC_Os09g11300OsAffx.30202.1.S1_x_at1/119+6270930..6273949hypothetical protein
LOC_Os09g11300Os.51754.1.S1_at1/119+6270930..6273949hypothetical protein
LOC_Os09g11310OsAffx.6234.1.S1_at11/119+6275651..6276322hypothetical protein
LOC_Os09g11320OsAffx.29803.1.S1_at10/119+6284004..6288486hypothetical protein
LOC_Os09g11320Os.57362.1.S1_at1/119+6284004..6288486hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.17642.1.S1_at--1114--3011Chr09:6261755..6261779 (25 bp)
AATGCTCCTCCACTTACTTTGAGCT
LOC_Os09g11280
OsAffx.17642.1.S1_at--453--3811Chr09:6261759..6261783 (25 bp)
CTCCTCCACTTACTTTGAGCTTAAT
LOC_Os09g11280
OsAffx.17642.1.S1_at--984--3811Chr09:6261762..6261784 (23 bp)
CTCCACTTACTTTGAGCTTAATGCA
LOC_Os09g11280
OsAffx.17642.1.S1_at--504--2051NONE
ACTTACTTTGAGCTTAATGCACTGT
NONE
OsAffx.17642.1.S1_at--70--10491NONE
TTACTTTGAGCTTAATGCACTGTTC
NONE
OsAffx.17642.1.S1_at--197--3671NONE
CTTTGAGCTTAATGCACTGTTCGGG
NONE
OsAffx.17642.1.S1_at--572--10491Chr09:6262439..6262458 (20 bp)
TTAATGCACTGTTCGGGGTGGACGC
LOC_Os09g11280
OsAffx.17642.1.S1_at--42--7971Chr09:6262459..6262483 (25 bp)
GGCGGACGTCGGCAGAGGGTGTAGA
LOC_Os09g11280
OsAffx.17642.1.S1_at--23--3951Chr09:6262468..6262492 (25 bp)
CGGCAGAGGGTGTAGAGTCTTGACT
LOC_Os09g11280
OsAffx.17642.1.S1_at--107--1171Chr09:6262483..6262507 (25 bp)
AGTCTTGACTGAGAGGCGTGGTCAC
LOC_Os09g11280
OsAffx.17642.1.S1_at--559--1331Chr09:6262522..6262546 (25 bp)
AGAGGATCCCGACAACGGCAACGGG
LOC_Os09g11280
Target Sequence 
AATGCTCCTCCACTTACTTTGAGCTTAATGCACTGTTCGGGGTGGACGCGGCGGACGTCGGCAGAGGGTGTAGAGTCTTG
ACTGAGAGGCGTGGTCACGGCCTCACGGGTGGAGAGGATCCCGACAACGGCAACGGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.17642.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis