Browse Element(s) Details


OsAffx.17643.1.S1_x_at

Description tigr:9637.m00854
TID=OsAffx.17643.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g1129011/11Indole-3-acetate beta-glucosyltransferase, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g11240Os.7219.1.S1_at11/119+6242180..6244884expressed protein
LOC_Os09g11250Os.24787.1.S1_at8/119+6245257..6248737co-chaperone GrpE family protein, expressed
LOC_Os09g11260OsAffx.29802.1.S1_at10/119+6249839..6250492hypothetical protein
LOC_Os09g11270Os.11452.1.S1_at11/119+6250864..6259438enhancer of polycomb, putative, expressed
LOC_Os09g11280OsAffx.17642.1.S1_at8/119+6261724..6262591hypothetical protein
LOC_Os09g11290OsAffx.17643.1.S1_x_at11/119+6265198..6265539Indole-3-acetate beta-glucosyltransferase, putative
LOC_Os09g11300OsAffx.6233.1.S1_at8/119+6270930..6273949hypothetical protein
LOC_Os09g11300OsAffx.30202.1.S1_x_at1/119+6270930..6273949hypothetical protein
LOC_Os09g11300Os.51754.1.S1_at1/119+6270930..6273949hypothetical protein
LOC_Os09g11310OsAffx.6234.1.S1_at11/119+6275651..6276322hypothetical protein
LOC_Os09g11320OsAffx.29803.1.S1_at10/119+6284004..6288486hypothetical protein
LOC_Os09g11320Os.57362.1.S1_at1/119+6284004..6288486hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0008194molecular_functionUDP-glycosyltransferase activity
GO:0016757molecular_functiontransferase activity, transferring glycosyl groups
GO:0016758molecular_functiontransferase activity, transferring hexosyl groups
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.17643.1.S1_x_at--1146--5631Chr09:6265234..6265258 (25 bp)
GACACCAAGCCGCTGAGCTTCGTCG
LOC_Os09g11290
OsAffx.17643.1.S1_x_at--433--2671Chr09:6265240..6265264 (25 bp)
AAGCCGCTGAGCTTCGTCGCCTACT
LOC_Os09g11290
OsAffx.17643.1.S1_x_at--514--3731Chr09:6265260..6265284 (25 bp)
CTACTTCTCCTTCGGCAGCTTTGCG
LOC_Os09g11290
OsAffx.17643.1.S1_x_at--698--8251Chr09:6265291..6265315 (25 bp)
GGCACCGCCCAGATGGAGGAGCTCA
LOC_Os09g11290
OsAffx.17643.1.S1_x_at--231--9651Chr09:6265358..6265382 (25 bp)
TCAGGGCCACCGAGGAGGCACAGCT
LOC_Os09g11290
OsAffx.17643.1.S1_x_at--932--4151Chr09:6265387..6265411 (25 bp)
CGCCACCTCCTGGATGCAGCGATGG
LOC_Os09g11290
OsAffx.17643.1.S1_x_at--1073--1631Chr09:6265404..6265428 (25 bp)
AGCGATGGCGTCGGGCGACACGCTC
LOC_Os09g11290
OsAffx.17643.1.S1_x_at--25--9171Chr09:6265447..6265471 (25 bp)
TGCGCCACGGGATGCTTCGTCACGG
LOC_Os09g11290
OsAffx.17643.1.S1_x_at--808--4351Chr09:6265451..6265475 (25 bp)
CCACGGGATGCTTCGTCACGGGGAT
LOC_Os09g11290
OsAffx.17643.1.S1_x_at--399--7971Chr09:6265472..6265496 (25 bp)
GGATGACGGCGTTTCTCCACGGCGA
LOC_Os09g11290
OsAffx.17643.1.S1_x_at--746--9491Chr09:6265485..6265509 (25 bp)
TCTCCACGGCGAGATCGAGCAGTGC
LOC_Os09g11290
Target Sequence 
GACACCAAGCCGCTGAGCTTCGTCGCCTACTTCTCCTTCGGCAGCTTTGCGTCCCTCGGCACCGCCCAGATGGAGGAGCT
CACCCGCGGCCTCCACGCTGCCGGCAAGCCGTTCCTGTGGGTGGTCAGGGCCACCGAGGAGGCACAGCTGCCCCGCCACC
TCCTGGATGCAGCGATGGCGTCGGGCGACACGCTCGTCGTGCGGTGGAGCCCCTGCGCCACGGGATGCTTCGTCACGGGG
ATGACGGCGTTTCTCCACGGCGAGATCGAGCAGTGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.17643.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis