Browse Element(s) Details


OsAffx.29803.1.S1_at

Description tigr:9637.m00857
TID=OsAffx.29803.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g1132010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g11270Os.11452.1.S1_at11/119+6250864..6259438enhancer of polycomb, putative, expressed
LOC_Os09g11280OsAffx.17642.1.S1_at8/119+6261724..6262591hypothetical protein
LOC_Os09g11290OsAffx.17643.1.S1_x_at11/119+6265198..6265539Indole-3-acetate beta-glucosyltransferase, putative
LOC_Os09g11300OsAffx.6233.1.S1_at8/119+6270930..6273949hypothetical protein
LOC_Os09g11300OsAffx.30202.1.S1_x_at1/119+6270930..6273949hypothetical protein
LOC_Os09g11300Os.51754.1.S1_at1/119+6270930..6273949hypothetical protein
LOC_Os09g11310OsAffx.6234.1.S1_at11/119+6275651..6276322hypothetical protein
LOC_Os09g11320OsAffx.29803.1.S1_at10/119+6284004..6288486hypothetical protein
LOC_Os09g11320Os.57362.1.S1_at1/119+6284004..6288486hypothetical protein
LOC_Os09g11330NANA9+6293425..6294952hypothetical protein
LOC_Os09g11339NANA9+6295478..6295656NA
LOC_Os09g11350NANA9+6299921..6301195hypothetical protein
LOC_Os09g11360NANA9+6304608..6310133retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29803.1.S1_at--372--9191Chr09:6284330..6284354 (25 bp)
TGCCTTGCGGTTTCACGATCTGGAA
LOC_Os09g11320
OsAffx.29803.1.S1_at--1069--991Chr09:6284354..6284378 (25 bp)
AGGATGCATCTCACCTAATGTTTGT
LOC_Os09g11320
OsAffx.29803.1.S1_at--288--831Chr09:6284488..6284512 (25 bp)
ATGGAAGGTCGCTCACTCGTGGCCA
LOC_Os09g11320
OsAffx.29803.1.S1_at--555--4771NONE
GCTGCTGGGTTGCTCACCTAAAGAT
NONE
OsAffx.29803.1.S1_at--536--6531Chr09:6288012..6288036 (25 bp)
GATTTAGCTCCAGGGATCTTCAACC
LOC_Os09g11320
OsAffx.29803.1.S1_at--710--931Chr09:6288050..6288074 (25 bp)
AGGAAACAATGTGCACCTCAGCCTT
LOC_Os09g11320
OsAffx.29803.1.S1_at--39--8973Chr09:6288122..6288146 (25 bp)
TGAAATTGATGAACTGGTCCAGCTG
LOC_Os09g11320
OsAffx.29803.1.S1_at--785--9211Chr09:6288139..6288163 (25 bp)
TCCAGCTGGGTAGCCGTTTGCAAGA
LOC_Os09g11320
OsAffx.29803.1.S1_at--167--5331Chr09:6288162..6288186 (25 bp)
GAAGTCATGCTCCTTGAAAACACCC
LOC_Os09g11320
OsAffx.29803.1.S1_at--1108--1131Chr09:6288408..6288432 (25 bp)
AGTCTGTGTACAAACGCTTTCGAAG
LOC_Os09g11320
OsAffx.29803.1.S1_at--911--5352Chr09:6288429..6288453 (25 bp)
GAAGATGCAAATCACTTGGCCAAAG
LOC_Os09g11320
Target Sequence 
TGCCTTGCGGTTTCACGATCTGGAAGGATGCATCTCACCTAATGTTTGTGTTGGAATCACAGGGAGCAGCAGCCGCATGG
AAGGTCGCTCACTCGTGGCCACGGGGGAATCACCTGATGCGAGGTCATCGTCATGGAGACATTCGCTGCTGGGTTGCTCA
CCTAAAGATTTAGCTCCAGGGATCTTCAACCTGTCCAGGAGAAAAGGAAACAATGTGCACCTCAGCCTTCAAAACAACCA
CTGGCTGCCAATCCTAAACCCCATTACCACGATAAGTGAAATTGATGAACTGGTCCAGCTGGGTAGCCGTTTGCAAGAAG
TCATGCTCCTTGAAAACACCCCCGATGACATTCGTTGGAAATGGACTCCCAATGGAGAATACTCAGCAAAGAGCGCTTAT
GAAGCACAATTCCAAGTCTGTGTACAAACGCTTTCGAAGATGCAAATCACTTGGCCAAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29803.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis