Browse Element(s) Details


OsAffx.17641.1.S1_at

Description tigr:9637.m00846
TID=OsAffx.17641.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g1121011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g11170Os.52847.1.S1_at9/119+6194158..6195917IBR domain containing protein, expressed
LOC_Os09g11180OsAffx.29801.1.S1_at11/119+6196403..6196831hypothetical protein
LOC_Os09g11190OsAffx.17640.1.S1_at11/119+6204643..6206169hypothetical protein
LOC_Os09g11200OsAffx.6231.1.S1_at11/119+6207946..6208227hypothetical protein
LOC_Os09g11210OsAffx.17641.1.S1_at11/119+6211043..6211517hypothetical protein
LOC_Os09g11220OsAffx.6468.1.S1_at8/119+6217761..6224987retrotransposon protein, putative, unclassified, expressed
LOC_Os09g11220OsAffx.6468.1.S1_x_at4/119+6217761..6224987retrotransposon protein, putative, unclassified, expressed
LOC_Os09g11230Os.17604.1.S1_at11/119+6232897..6237918Serine/threonine protein phosphatase PP-X isozyme 2, putative, expressed
LOC_Os09g11230OsAffx.6232.1.S1_s_at10/119+6232897..6237918Serine/threonine protein phosphatase PP-X isozyme 2, putative, expressed
LOC_Os09g11230OsAffx.6232.1.S1_at2/119+6232897..6237918Serine/threonine protein phosphatase PP-X isozyme 2, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.17641.1.S1_at--516--8611Chr09:6211444..6211468 (25 bp)
TGGTGATCCTCTCAACCGGCGGCCA
LOC_Os09g11210
OsAffx.17641.1.S1_at--823--4911Chr09:6211379..6211403 (25 bp)
GCTTGCTCCTCGAGTTCTAATGGAA
LOC_Os09g11210
OsAffx.17641.1.S1_at--346--6731Chr09:6211366..6211390 (25 bp)
GTTCTAATGGAACGGTGACGTGCTA
LOC_Os09g11210
OsAffx.17641.1.S1_at--871--7371Chr09:6211352..6211376 (25 bp)
GTGACGTGCTACAACAACGCTATCA
LOC_Os09g11210
OsAffx.17641.1.S1_at--1125--4111Chr09:6211335..6211359 (25 bp)
CGCTATCAACACATGCAGCTCAAAC
LOC_Os09g11210
OsAffx.17641.1.S1_at--38--391Chr09:6211304..6211328 (25 bp)
ATCACACCTCAGTATTGCGACCAGT
LOC_Os09g11210
OsAffx.17641.1.S1_at--467--10231Chr09:6211292..6211316 (25 bp)
TATTGCGACCAGTGCCGCAGAGAGT
LOC_Os09g11210
OsAffx.17641.1.S1_at--831--1351Chr09:6211274..6211298 (25 bp)
AGAGAGTCCAACCAGCAGTGCCAGA
LOC_Os09g11210
OsAffx.17641.1.S1_at--775--1431Chr09:6211252..6211276 (25 bp)
AGAACTACTGCTACAATGGCTGCTT
LOC_Os09g11210
OsAffx.17641.1.S1_at--387--9851Chr09:6211241..6211265 (25 bp)
TACAATGGCTGCTTGTACGGCTGCA
LOC_Os09g11210
OsAffx.17641.1.S1_at--704--3831Chr09:6211233..6211257 (25 bp)
CTGCTTGTACGGCTGCAGCTTGCAG
LOC_Os09g11210
Target Sequence 
TGGTGATCCTCTCAACCGGCGGCCAGCCACCGGCGGCGGCGGCGCAGACCGATTACTGCGCCACCGCTTGCTCCTCGAGT
TCTAATGGAACGGTGACGTGCTACAACAACGCTATCAACACATGCAGCTCAAACTGCAGCATCACACCTCAGTATTGCGA
CCAGTGCCGCAGAGAGTCCAACCAGCAGTGCCAGAACTACTGCTACAATGGCTGCTTGTACGGCTGCAGCTTGCAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.17641.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis