Browse Element(s) Details


Os.52847.1.S1_at

Description gb:AK069582.1
DB_XREF= gi:32979606
TID=Os.52847.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52847 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023021A17, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023021A17, full insert sequence.
FL= gb:AK069582.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g111709/11IBR domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g11140OsAffx.25834.1.S1_at1/119+6170119..6173633hypothetical protein
LOC_Os09g11150OsAffx.11392.5.S1_at11/119+6175333..6178600hypothetical protein
LOC_Os09g11150OsAffx.11392.2.S1_x_at3/119+6175333..6178600hypothetical protein
LOC_Os09g11160OsAffx.29800.1.S1_at11/119+6183856..6185368expressed protein
LOC_Os09g11170Os.52847.1.S1_at9/119+6194158..6195917IBR domain containing protein, expressed
LOC_Os09g11180OsAffx.29801.1.S1_at11/119+6196403..6196831hypothetical protein
LOC_Os09g11190OsAffx.17640.1.S1_at11/119+6204643..6206169hypothetical protein
LOC_Os09g11200OsAffx.6231.1.S1_at11/119+6207946..6208227hypothetical protein
LOC_Os09g11210OsAffx.17641.1.S1_at11/119+6211043..6211517hypothetical protein
LOC_Os09g11220OsAffx.6468.1.S1_at8/119+6217761..6224987retrotransposon protein, putative, unclassified, expressed
LOC_Os09g11220OsAffx.6468.1.S1_x_at4/119+6217761..6224987retrotransposon protein, putative, unclassified, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016020cellular_componentmembrane
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52847.1.S1_at--1044--4211NONE
CCGCGGTGCGAGTTCTTCGTGGACA
NONE
Os.52847.1.S1_at--264--1031Chr09:6195492..6195516 (25 bp)
AGGTACGAAGGCTGCTCGCACATCA
LOC_Os09g11170
Os.52847.1.S1_at--483--91Chr09:6195577..6195601 (25 bp)
ATTCCTCGTGTCAGCGACCTTGAAA
LOC_Os09g11170
Os.52847.1.S1_at--773--1631Chr09:6195589..6195613 (25 bp)
AGCGACCTTGAAACACCTGGATGGT
LOC_Os09g11170
Os.52847.1.S1_at--49--611Chr09:6195633..6195657 (25 bp)
ATGCCCCGTCAGTCAAACTATTATA
LOC_Os09g11170
Os.52847.1.S1_at--297--8791Chr09:6195668..6195692 (25 bp)
TGTTATCACCTGTTAATCTGCTATC
LOC_Os09g11170
Os.52847.1.S1_at--20--6771Chr09:6195679..6195703 (25 bp)
GTTAATCTGCTATCTATCCGAATTT
LOC_Os09g11170
Os.52847.1.S1_at--411--10091NONE
TAGGTTTAGATCTCGGTGCCAGCTC
NONE
Os.52847.1.S1_at--1026--7271Chr09:6195728..6195752 (25 bp)
GTGCCAGCTCTTTACACCTAAATTT
LOC_Os09g11170
Os.52847.1.S1_at--1077--7451Chr09:6195794..6195818 (25 bp)
GTGTGCAGTCCAACTATTTTTTACT
LOC_Os09g11170
Os.52847.1.S1_at--684--6871Chr09:6195826..6195850 (25 bp)
GTATTGTTAGCTGTTTTCTATCCAA
LOC_Os09g11170
Target Sequence 
CCGCGGTGCGAGTTCTTCGTGGACAGGTACGAAGGCTGCTCGCACATCACCTGCAGGTGCGGGCTGGAGTTCTGCTACGG
GTGTGGCCAGGAATGGGGGCCTACTGGTCATTCCTCGTGTCAGCGACCTTGAAACACCTGGATGGTCGGGATTCGGATGC
TGGACATGCCCCGTCAGTCAAACTATTATAACTAGTGTTATGTTATCACCTGTTAATCTGCTATCTATCCGAATTTAATT
CATCTTAGGTTTAGATCTCGGTGCCAGCTCTTTACACCTAAATTTGGTATCTAGTAATTATAGTCGTTGAGATAGATAAA
AAACAAGTGTGCAGTCCAACTATTTTTTACTATTGCTAGTATTGTTAGCTGTTTTCTATCCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52847.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis