Browse Element(s) Details


OsAffx.17640.1.S1_at

Description tigr:9637.m00844
TID=OsAffx.17640.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g1119011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g11160OsAffx.29800.1.S1_at11/119+6183856..6185368expressed protein
LOC_Os09g11170Os.52847.1.S1_at9/119+6194158..6195917IBR domain containing protein, expressed
LOC_Os09g11180OsAffx.29801.1.S1_at11/119+6196403..6196831hypothetical protein
LOC_Os09g11190OsAffx.17640.1.S1_at11/119+6204643..6206169hypothetical protein
LOC_Os09g11200OsAffx.6231.1.S1_at11/119+6207946..6208227hypothetical protein
LOC_Os09g11210OsAffx.17641.1.S1_at11/119+6211043..6211517hypothetical protein
LOC_Os09g11220OsAffx.6468.1.S1_at8/119+6217761..6224987retrotransposon protein, putative, unclassified, expressed
LOC_Os09g11220OsAffx.6468.1.S1_x_at4/119+6217761..6224987retrotransposon protein, putative, unclassified, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.17640.1.S1_at--631--6891Chr09:6204798..6204822 (25 bp)
GTATACCAGAATTGCACCAGTTTAT
LOC_Os09g11190
OsAffx.17640.1.S1_at--570--1211Chr09:6204816..6204840 (25 bp)
AGTTTATGCTTCATCCACTGTTTCT
LOC_Os09g11190
OsAffx.17640.1.S1_at--245--6832Chr09:6204835..6204859 (25 bp)
GTTTCTCCCCATGCTTGCATAGGGA
LOC_Os09g11190
OsAffx.17640.1.S1_at--1064--10731Chr09:6205772..6205796 (25 bp)
TTGACACCACCAGTGAATGCCTCGG
LOC_Os09g11190
OsAffx.17640.1.S1_at--973--351Chr09:6205899..6205923 (25 bp)
ATCAACTACCTATCTACCTCAAGGA
LOC_Os09g11190
OsAffx.17640.1.S1_at--625--2911Chr09:6205919..6205943 (25 bp)
AAGGATCTCTGCTGCATGCGTGCAA
LOC_Os09g11190
OsAffx.17640.1.S1_at--951--10231Chr09:6205953..6205977 (25 bp)
TTTGGCGACTACAATAAGCGGCGGC
LOC_Os09g11190
OsAffx.17640.1.S1_at--147--8351Chr09:6205972..6205996 (25 bp)
GGCGGCGGCAGTACAAACAATAGCT
LOC_Os09g11190
OsAffx.17640.1.S1_at--197--10011Chr09:6205992..6206016 (25 bp)
TAGCTCTGCGGCAAGGACGTGGACC
LOC_Os09g11190
OsAffx.17640.1.S1_at--335--8071Chr09:6206012..6206036 (25 bp)
GGACCTTGTTCCCTGAAGTTGAGTT
LOC_Os09g11190
OsAffx.17640.1.S1_at--71--6071Chr09:6206032..6206056 (25 bp)
GAGTTCTACTCCCTATATATTATTG
LOC_Os09g11190
Target Sequence 
GTATACCAGAATTGCACCAGTTTATGCTTCATCCACTGTTTCTCCCCATGCTTGCATAGGGAGACAGGGTGGTCTAAACC
TGCAAGTCAGGGGCTCCTTCATCGTCTCCCTTGACACCACCAGTGAATGCCTCGGCCGCGGCACCAAGATCACCATCCTC
AAGGTCAAGGACGACCAACTCGAGTACCTAGAGGGGAGTGCCGCCTCAGTGACCTCATCAACAAGCACTCCGAGCTCATC
AACTACCTATCTACCTCAAGGATCTCTGCTGCATGCGTGCAAAGCAGTAGGTTTGGCGACTACAATAAGCGGCGGCGGCA
GTACAAACAATAGCTCTGCGGCAAGGACGTGGACCTTGTTCCCTGAAGTTGAGTTCTACTCCCTATATATTATTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.17640.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis