Browse Element(s) Details


Os.17611.1.S1_at

Description gb:AK068067.1
DB_XREF= gi:32978085
TID=Os.17611.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.17611 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013131K03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013131K03, full insert sequence.
FL= gb:AK068067.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3122010/11expressed protein
LOC_Os01g196301/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g31190OsAffx.6461.1.S1_at11/119+18753630..18754187MSF1-like conserved region family protein
LOC_Os09g31200Os.2407.1.S1_at11/119+18759705..18760622Multiple stress-responsive zinc-finger protein ISAP1, putative, expressed
LOC_Os09g31210Os.54483.1.S1_at11/119+18768773..18770493Protein kinase domain containing protein, expressed
LOC_Os09g31220Os.17611.1.S1_at10/119+18778617..18781249expressed protein
LOC_Os09g31230Os.8446.1.S1_at10/119+18781976..18787014expressed protein
LOC_Os09g31240NANA9+18788586..18790289retrotransposon protein, putative, unclassified
LOC_Os09g31250Os.2500.1.S1_at1/119+18790869..18793691transposon protein, putative, unclassified
LOC_Os09g31260Os.5953.1.S1_s_at11/119+18798382..18799056expressed protein
LOC_Os09g31270OsAffx.17972.1.S1_at11/119+18800409..18802436glycoside hydrolase family 28 protein, putative, expressed
LOC_Os09g31280Os.15215.1.S1_at11/119+18804788..18807713OTU-like cysteine protease family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.17611.1.S1_at--809--7252Chr12:21103997..21104021 (25 bp)
GTCCTGATTCTGAATTTTCGGATAG
NONE
Os.17611.1.S1_at--734--1571Chr09:18779252..18779276 (25 bp)
AGCTCGATCGAATAGCAGTTTTCTA
LOC_Os09g31220
Os.17611.1.S1_at--964--3852Chr12:21104112..21104136 (25 bp)
CTGACTAGATATGTTCGCTGTTGAA
NONE
Os.17611.1.S1_at--218--4753Chr12:21104128..21104152 (25 bp)
GCTGTTGAACATACCCTTTTTTCTC
NONE
Os.17611.1.S1_at--520--10732Chr12:21104231..21104255 (25 bp)
TTGCAGGCATCAGCATCTACAGTGT
NONE
Os.17611.1.S1_at--737--9872Chr12:21104248..21104272 (25 bp)
TACAGTGTGCACTCTTGCAGGTGGA
NONE
Os.17611.1.S1_at--694--8511Chr12:21104443..21104467 (25 bp)
TGGAATGCCATCCTCGACATGTCCT
NONE
Os.17611.1.S1_at--905--5632Chr12:21104458..21104482 (25 bp)
GACATGTCCTTCGTCAACGTTCGTC
NONE
Os.17611.1.S1_at--1089--4472Chr11:12048103..12048124 (22 bp)
GCCGGCAGCCAACACAAAGGGTCAG
NONE
Os.17611.1.S1_at--1003--2311Chr09:18778789..18778813 (25 bp)
AAAGGGTCAGCCCAGGACGACCACA
LOC_Os09g31220
Os.17611.1.S1_at--1112--892Chr12:21104550..21104574 (25 bp)
AGGCGATGCGATGCCCTCTGGATTG
NONE
Target Sequence 
GTCCTGATTCTGAATTTTCGGATAGATGAAAACTCAAAAAGCTCGATCGAATAGCAGTTTTCTAAATTTTTGTTGTTCAA
AGGAGCACATCAATTGAATTCTTTTTTTCTGAACTTCTGACTAGATATGTTCGCTGTTGAACATACCCTTTTTTCTCTGT
ATATTTTTGNCAGANCAGACATCTTCAGACTAAGACTAAGGTCTAAATTTTACTGAAATNATTAACTTCTAATTTTTGCA
GGCATCAGCATCTACAGTGTGCACTCTTGCAGGTGGATGCACATCTTGATGGAAACTAGAAAAGAACATGAGAAGATTAT
GCCANGTGGTGNTGGTGCCACTGGAATGCCATCCTCGACATGTCCTTCGTCAACGTTCGTCGCCGGCAGCCAACACAAAG
GGTCAGCCCAGGACGACCACACCACAATTGATGACAGGCTTCGGTGGCAGGCGATGCGATGCCCTCTGGATTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.17611.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis