Browse Element(s) Details


Os.17618.2.S1_x_at

Description gb:AK065417.1
DB_XREF= gi:32975435
TID=Os.17618.2
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.17618 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023019A01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013022E06, full insert sequence.
FL= gb:AK065417.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g4357011/11UBX domain-containing protein 1, putative, expressed
LOC_Os09g236901/11UBX domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g43550OsAffx.10222.1.S1_x_at2/113+24269772..24274214hypothetical protein
LOC_Os03g43550Os.54691.1.S1_x_at1/113+24269772..24274214hypothetical protein
LOC_Os03g43550Os.45902.1.A1_x_at1/113+24269772..24274214hypothetical protein
LOC_Os03g43560OsAffx.20313.1.S1_x_at1/113+24280308..24282571hypothetical protein
LOC_Os03g43564OsAffx.31174.4.S1_x_at1/113+24289586..24291763hypothetical protein
LOC_Os03g43570Os.17618.1.S1_at11/113+24295430..24298984UBX domain-containing protein 1, putative, expressed
LOC_Os03g43570Os.17618.2.S1_x_at11/113+24295430..24298984UBX domain-containing protein 1, putative, expressed
LOC_Os03g43580OsAffx.25518.1.S1_x_at11/113+24301697..24303205IQ calmodulin-binding motif family protein, expressed
LOC_Os03g43580OsAffx.7853.1.S1_x_at1/113+24301697..24303205IQ calmodulin-binding motif family protein, expressed
LOC_Os03g43580OsAffx.6794.1.S1_x_at1/113+24301697..24303205IQ calmodulin-binding motif family protein, expressed
LOC_Os03g43590Os.10813.1.S1_at11/113+24305830..24311483LSTK-1-like kinase, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0003676molecular_functionnucleic acid binding
GO:0008270molecular_functionzinc ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.17618.2.S1_x_at--384--6431Chr03:24298390..24298414 (25 bp)
GATCTTATCTGTCCAGCTGGTCCTA
LOC_Os03g43570
Os.17618.2.S1_x_at--621--4671Chr03:24298452..24298476 (25 bp)
GCGGGCACACACACTGCTGGATGAA
LOC_Os03g43570
Os.17618.2.S1_x_at--1100--10512Chr03:24298534..24298558 (25 bp)
TTCACTGGTCTGTTGGACGAGCTTC
LOC_Os03g43570
Os.17618.2.S1_x_at--743--5771Chr03:24298549..24298573 (25 bp)
GACGAGCTTCTTGAGGCCAGCGAGC
LOC_Os03g43570
Os.17618.2.S1_x_at--969--8971Chr03:24298594..24298618 (25 bp)
TGAACTGTGAATACTGCCGGCAATT
LOC_Os03g43570
Os.17618.2.S1_x_at--1042--3171Chr03:24298614..24298638 (25 bp)
CAATTATTTCGTGGCTGCTGACTTC
LOC_Os03g43570
Os.17618.2.S1_x_at--164--3151Chr03:24298782..24298806 (25 bp)
AATTCATCAGGCCTAGGTCTACATT
LOC_Os03g43570
Os.17618.2.S1_x_at--1133--2072Chr03:24298802..24298826 (25 bp)
ACATTCTTCTGTAACTTGTGCGATG
LOC_Os03g43570
Os.17618.2.S1_x_at--391--4331Chr03:24298864..24298888 (25 bp)
CCATCTCTTAGTTTCATGTTCGCTG
LOC_Os03g43570
Os.17618.2.S1_x_at--725--731Chr03:24298879..24298903 (25 bp)
ATGTTCGCTGTTGTGATTCTCAATA
LOC_Os03g43570
Os.17618.2.S1_x_at--1071--6711Chr03:24298931..24298955 (25 bp)
GTTCTGGCAATATAGCTACTCCTGT
LOC_Os03g43570
Target Sequence 
GATCTTATCTGTCCAGCTGGTCCTAGGACACGTGTCACACCTCCTTTTCCACAACCAGGGGAGCGGGCACACACACTGCT
GGATGAAGACCTAGTCCCTTCTGCTCGGCTTACCTTCAAGCCTAAATAGACTGATTCGGTTNNNTTCACTGGTCTGTTGG
ACGAGCTTCTTGAGGCCAGCGAGCCGTTTNACATCTGNCATCCTCATGAACTGTGAATACTGCCGGCAATTATTTCGTGG
CTGCTGACTTCCNTTGTGTAAAACAGATATCCGAATGCTCTGTNTACATGGCTGTAATTTGACACAGGGCTATTGAAGGC
TGGATACCTGATATGTGATACATGTAATTGCTTGGCAATTGCCAAATGCCAAACCATACGGTAGAAGAGGCCAGCAATTC
ATCAGGCCTAGGTCTACATTCTTCTGTAACTTGTGCGATGAGTAGGATCTGCTATGTACNAAAACAACAGATGGAAACCA
TCTCTTAGTTTCATGTTCGCTGTTGTGATTCTCAATATAGCTACTCCTATCAAATCAATATACTGTTCTGGCAATATAGC
TACTCCTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.17618.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis