Browse Element(s) Details


Os.17623.1.S1_at

Description gb:AK061531.1
DB_XREF= gi:32971549
TID=Os.17623.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.17623 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative omega-3 fatty acid desaturase (P0034A04.31), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:006-310-E06, full insert sequence.
FL= gb:AK061531.1 gb:AK062022.1 gb:AK098930.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4931011/11Omega-3 fatty acid desaturase, chloroplast precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g49270Os.8779.1.S1_at11/117+29503690..29510383AMP deaminase, putative, expressed
LOC_Os07g49280Os.38120.1.S1_at11/117+29509905..29514638expressed protein
LOC_Os07g49290OsAffx.21462.1.S1_at11/117+29517758..29520452acetyltransferase, GNAT family protein, expressed
LOC_Os07g49290OsAffx.21462.3.S1_x_at2/117+29517758..29520452acetyltransferase, GNAT family protein, expressed
LOC_Os07g49290OsAffx.21462.2.S1_x_at1/117+29517758..29520452acetyltransferase, GNAT family protein, expressed
LOC_Os07g49300Os.44779.2.S1_x_at11/117+29520749..29528909transducin family protein, putative, expressed
LOC_Os07g49300Os.44779.1.S1_at11/117+29520749..29528909transducin family protein, putative, expressed
LOC_Os07g49310Os.17623.1.S1_at11/117+29529574..29532424Omega-3 fatty acid desaturase, chloroplast precursor, putative, expressed
LOC_Os07g49320Os.19304.1.S1_at11/117+29532776..29544001HEAT repeat family protein, expressed
LOC_Os07g49330Os.8107.1.S1_at11/117+29544148..29547285phosphoinositide-specific phospholipase C, putative, expressed
LOC_Os07g49340OsAffx.31816.1.S1_at2/117+29551217..29553949transposon protein, putative, Mariner sub-class
LOC_Os07g49350Os.53257.1.S1_at10/117+29554325..29556346expressed protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006633biological_processfatty acid biosynthesis
GO:0006636biological_processfatty acid desaturation
GO:0009266biological_processresponse to temperature stimulus
GO:0005783cellular_componentendoplasmic reticulum
GO:0009507cellular_componentchloroplast
GO:0016720molecular_functiondelta12-fatty acid dehydrogenase activity
GO:0042389molecular_functionomega-3 fatty acid desaturase activity
GO:0045485molecular_functionomega-6 fatty acid desaturase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.17623.1.S1_at--414--3291Chr07:29531781..29531805 (25 bp)
CAAATCCCGCATTACCATCTAATTG
LOC_Os07g49310
Os.17623.1.S1_at--45--10351Chr07:29531988..29532012 (25 bp)
TTTTCCCTTACACCTGTTTGGAGCG
LOC_Os07g49310
Os.17623.1.S1_at--45--3951Chr07:29532019..29532043 (25 bp)
CGGAGCTTGAAACGCGACCACTATG
LOC_Os07g49310
Os.17623.1.S1_at--138--5631Chr07:29532049..29532073 (25 bp)
GACACCGGAGATGTGGTCTACTACC
LOC_Os07g49310
Os.17623.1.S1_at--181--5811Chr07:29532075..29532099 (25 bp)
GACCGACCCTGCTAACTAAATTAAT
LOC_Os07g49310
Os.17623.1.S1_at--498--10491Chr07:29532111..29532135 (25 bp)
TTCAATTCTTTTAAGCCCGGAGGCT
LOC_Os07g49310
Os.17623.1.S1_at--836--6871Chr07:29532176..29532200 (25 bp)
GTATTCAACATTCGATCCACAGACA
LOC_Os07g49310
Os.17623.1.S1_at--30--2791Chr07:29532207..29532231 (25 bp)
AAGAGACCTATATATATCGCCGATC
LOC_Os07g49310
Os.17623.1.S1_at--847--231Chr07:29532239..29532263 (25 bp)
ATATATGTGCGTGTCCGTGTGGAGA
LOC_Os07g49310
Os.17623.1.S1_at--377--6151Chr07:29532268..29532292 (25 bp)
GAGGTCACAATTCTTTCCATGGATA
LOC_Os07g49310
Os.17623.1.S1_at--1038--9131Chr07:29532342..29532366 (25 bp)
TGCGTGCGTGCTGTACTTTGTAAGA
LOC_Os07g49310
Target Sequence 
CAAATCCCGCATTACCATCTAATTGAGGCGACGGAAGCAGCAAAGGGTGTGATGGGGAAATACTACAGGGAGCCGGACAA
GTCTGGGCCTTTTCCCTTACACCTGTTTGGAGCGCTGTCCCGGAGCTTGAAACGCGACCACTATGTCAGCGACACCGGAG
ATGTGGTCTACTACCAGACCGACCCTGCTAACTAAATTAATTTTACATTTCCTTCAATTCTTTTAAGCCCGGAGGCTTAA
ATTAGCTTAATTAGNTAGCTGCGACTGACCTGGACATGTATTCAACATTCGATCCACAGACAGATAGAAAGAGACCTATA
TATATCGCCGATCNATCGATATATATGTGCGTGTCCGTGTGGAGATATGGAGGTCACAATTCTTTCCATGGATATATAGG
AGTATACATACATGTATTGAAGGATATGTAGCTAGATTTGATGTGCGTGCGTGCTGTACTTTGTAAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.17623.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis