Browse Element(s) Details


Os.17666.1.S1_at

Description gb:AK065592.1
DB_XREF= gi:32975610
TID=Os.17666.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.17666 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013027G15, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013027G15, full insert sequence.
FL= gb:AK065592.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4866011/11Protein kinase domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g48600Os.49512.1.S1_at11/115+27777358..27781768Glycosyltransferase family 43 protein, expressed
LOC_Os05g48600Os.49512.1.S1_s_at11/115+27777358..27781768Glycosyltransferase family 43 protein, expressed
LOC_Os05g48610OsAffx.15153.1.S1_x_at11/115+27784557..27785049expressed protein
LOC_Os05g48610Os.19990.1.S1_x_at2/115+27784557..27785049expressed protein
LOC_Os05g48620Os.15195.1.S1_at11/115+27785202..27794256expressed protein
LOC_Os05g48630Os.10136.1.S1_at11/115+27795383..27796345Photosystem I reaction center subunit VI, chloroplast precursor, putative, expressed
LOC_Os05g48640Os.48456.1.S1_at11/115+27796794..27799616pollen-specific kinase partner protein, putative, expressed
LOC_Os05g48650OsAffx.15154.1.S1_at8/115+27800234..27801140DNA-binding protein, putative, expressed
LOC_Os05g48660Os.17666.1.S1_at11/115+27803341..27806137Protein kinase domain containing protein, expressed
LOC_Os05g48670OsAffx.27371.1.S1_at11/115+27809352..27812420Tub family protein, expressed
LOC_Os05g48680Os.54463.1.S1_at11/115+27812777..27813377expressed protein
LOC_Os05g48690Os.35356.1.S1_at11/115+27815785..27819208expressed protein
LOC_Os05g48700Os.51835.1.S1_a_at11/115+27827531..27829652oxidoreductase, 2OG-Fe oxygenase family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0007169biological_processtransmembrane receptor protein tyrosine kinase signaling pathway
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0005524molecular_functionATP binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.17666.1.S1_at--1068--2131Chr05:27803946..27803970 (25 bp)
ACAGTTTTGGCATACTGCTTCTTGA
LOC_Os05g48660
Os.17666.1.S1_at--557--2391Chr05:27803892..27803916 (25 bp)
AAAACGAGGGCTCCCTGGCGAATCT
LOC_Os05g48660
Os.17666.1.S1_at--1123--1671Chr05:27803717..27803741 (25 bp)
AGCCTCCATGCTTGATTCAGTACTA
LOC_Os05g48660
Os.17666.1.S1_at--201--5271Chr05:27803644..27803668 (25 bp)
GAATGCATCCAGAGTGACCCAACGA
LOC_Os05g48660
Os.17666.1.S1_at--808--1351Chr05:27803582..27803606 (25 bp)
AGAGACCATAGCCATTTCGCCGGAT
LOC_Os05g48660
Os.17666.1.S1_at--267--51Chr05:27803543..27803567 (25 bp)
ATTGTCTCCGCTCTGGTGGGCTGAA
LOC_Os05g48660
Os.17666.1.S1_at--716--8631Chr05:27803527..27803551 (25 bp)
TGGGCTGAAGTGGAGGTCCTCTCAC
LOC_Os05g48660
Os.17666.1.S1_at--608--5011Chr05:27803447..27803471 (25 bp)
GCAGGATGACGATCTTGCTGTGCAT
LOC_Os05g48660
Os.17666.1.S1_at--620--4731Chr05:27803431..27803455 (25 bp)
GCTGTGCATACTGCTGTTCGTGCAA
LOC_Os05g48660
Os.17666.1.S1_at--177--10631Chr05:27803415..27803439 (25 bp)
TTCGTGCAACCTTTACCTTGTGCAA
LOC_Os05g48660
Os.17666.1.S1_at--335--751Chr05:27803380..27803404 (25 bp)
ATGTTTGATACTGCCCTTGTGCAAC
LOC_Os05g48660
Target Sequence 
ACAGTTTTGGCATACTGCTTCTTGAAATCATCTCAGGGAAACCCCCTTACTCTGAAAACGAGGGCTCCCTGGCGAATCTG
GCTTTGGGGTGCATTATCAAAGGTCGGAGTATAGCCTCCATGCTTGATTCAGTACTAGAGTCACACAAAGAAAATGAGCT
AGATGTGATCTGTCAGATAATCATGGAATGCATCCAGAGTGACCCAACGAAGAGACCAGGCATGAGGGAGATCACCACAA
GGCTGAGAGAGACCATAGCCATTTCGCCGGATGCAGCAACGCCCAGATTGTCTCCGCTCTGGTGGGCTGAAGTGGAGGTC
CTCTCACCAGTGGAGCCAAGGTAGAAACAATGATAAATGTGCTTCTGAAAAACCAACATCCTGCAGGATGACGATCTTGC
TGTGCATACTGCTGTTCGTGCAACCTTTACCTTGTGCAACTCCCTGCCCATGTTTGATACTGCCCTTGTGCAAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.17666.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis