Browse Element(s) Details


Os.17670.1.S1_at

Description gb:AK064834.1
DB_XREF= gi:32974852
TID=Os.17670.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.17670 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013000F19, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013000F19, full insert sequence.
FL= gb:AK064834.1 gb:AK062257.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g314586/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g31442OsAffx.27239.2.S1_at11/119+18936373..18937979hypothetical protein
LOC_Os09g31442Os.57198.1.S1_at1/119+18936373..18937979hypothetical protein
LOC_Os09g31446Os.52093.1.S1_at11/119+18943434..18945190expressed protein
LOC_Os09g31450OsAffx.17978.1.S1_at11/119+18949084..18950277Leucine Rich Repeat family protein, expressed
LOC_Os09g31454Os.55570.1.S1_x_at11/119+18952659..18955664Myb-like DNA-binding domain containing protein, expressed
LOC_Os09g31454Os.55570.1.S1_at11/119+18952659..18955664Myb-like DNA-binding domain containing protein, expressed
LOC_Os09g31454Os.6840.1.S1_at11/119+18952659..18955664Myb-like DNA-binding domain containing protein, expressed
LOC_Os09g31458Os.17670.1.S1_at6/119+18956647..18958390expressed protein
LOC_Os09g31462NANA9+18959794..18960195hypothetical protein
LOC_Os09g31466Os.49006.1.S1_at11/119+18961153..18962967expressed protein
LOC_Os09g31470Os.10078.1.S1_at11/119+18963645..18967417AT hook motif family protein, expressed
LOC_Os09g31474NANA9+18975630..18976825hypothetical protein
LOC_Os09g31478Os.23143.1.S1_at11/119+18977136..18982481Auxin Efflux Carrier family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.17670.1.S1_at--24--9931Chr09:18957018..18957042 (25 bp)
TACTGCAACTTGACATGGCTGCTTG
LOC_Os09g31458
Os.17670.1.S1_at--16--4771Chr09:18957001..18957025 (25 bp)
GCTGCTTGGTTAAAATTTTGCGCTC
LOC_Os09g31458
Os.17670.1.S1_at--317--10391Chr09:18956986..18957010 (25 bp)
TTTTGCGCTCAATAATACATTTGGT
LOC_Os09g31458
Os.17670.1.S1_at--257--1051Chr09:18956961..18956985 (25 bp)
AGGTGCAGTTTGCTTCCCCAGGGAA
LOC_Os09g31458
Os.17670.1.S1_at--401--3071Chr09:18956909..18956933 (25 bp)
AATAATCTCGCCTTATTTTCCAGGC
LOC_Os09g31458
Os.17670.1.S1_at--809--4931Chr09:18956880..18956904 (25 bp)
GCTTGTGCTAGACTGCTACTAGTAG
LOC_Os09g31458
Os.17670.1.S1_at--79--5291NONE
GAATGGAGGTACTTTGTAGTCGTTA
NONE
Os.17670.1.S1_at--856--10731NONE
TTGTAGTCGTTATTGGAAACCCATT
NONE
Os.17670.1.S1_at--722--2591NONE
AACCCATTTACGATGGAATGAGCCT
NONE
Os.17670.1.S1_at--189--1871NONE
ACGAGATTGCGTGAACCTAAGGCGA
NONE
Os.17670.1.S1_at--196--6131NONE
GAGTGTGTCGCAATGGCGCCACCCT
NONE
Target Sequence 
TACTGCAACTTGACATGGCTGCTTGGTTAAAATTTTGCGCTCAATAATACATTTGGTAGGTGCAGTTTGCTTCCCCAGGG
AAGCAAATGGAATTCTCATAAGGTGATGTAATAATCTCGCCTTATTTTCCAGGCCGTNGCTTGTGCTAGACTGCTACTAG
TAGTATTATTTATCTCCAATTCNCCATGTATAAACTNGCTCTTTTNTTAGTTGAAGTTTCAGCTCCATTGAGATGTATGA
AACNGCTTTAGTTTTCCAGATCATCCTTATNNCAATTTCAATCCANANNANNANNANNNNNNTNNNNNNANNNNNNANNA
AANTNNNNNNNNNNNNNNNTNNNNANNNNNNNNNNNNNNNNNNNNNNNNNNNNNATNNNNNNNNNNNNGNNNNNNGNTGC
AGTGAATGGAGGTACTTTGTAGTCGTTATTGGAAACCCATTTACGATGGAATGAGCCTAAAAGAACGAGATTGCGTGAAC
CTAAGGCGAGGAGTGTGTCGCAATGGCGCCACCCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.17670.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis