Browse Element(s) Details


Os.17674.1.S1_at

Description gb:AK101916.1
DB_XREF= gi:32987125
TID=Os.17674.1
CNT=13
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.17674 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) unknown protein (OSJNBa0018F16.3), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033071I02, full insert sequence.
FL= gb:AK101916.1 gb:AK102067.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3181011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g31770Os.18181.1.S1_x_at11/1110+16322527..16330943pleckstrin homology domain-containing protein, putative, expressed
LOC_Os10g31780NANA10+16334542..16335327NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os10g31790Os.15802.2.S1_x_at11/1110+16336424..16344008ubiquitin family protein, putative, expressed
LOC_Os10g31800NANA10+16344657..16345385hypothetical protein
LOC_Os10g31810Os.17674.1.S1_at11/1110+16346191..16348479expressed protein
LOC_Os10g31820Os.15104.1.S1_s_at11/1110+16357513..16364101glutamine synthetase, putative, expressed
LOC_Os10g31830Os.46898.1.S1_at11/1110+16364171..16368113Ras-related protein Rab-18, putative, expressed
LOC_Os10g31840OsAffx.30629.1.S1_at11/1110+16373378..16373719hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0042175cellular_componentnuclear envelope-endoplasmic reticulum network
GO:0005509molecular_functioncalcium ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.17674.1.S1_at--335--6491Chr10:16347880..16347904 (25 bp)
GATAGTCTCCTTACGACACTTAATG
LOC_Os10g31810
Os.17674.1.S1_at--534--4711Chr10:16347916..16347940 (25 bp)
GCTGGCCGGCATTTGTACATTGCAA
LOC_Os10g31810
Os.17674.1.S1_at--671--1191Chr10:16347983..16348007 (25 bp)
AGTATCGAACACACTTCCTGGATGA
LOC_Os10g31810
Os.17674.1.S1_at--720--1231Chr10:16348107..16348131 (25 bp)
AGTTGACACTGAGGTGTTCCTTCGG
LOC_Os10g31810
Os.17674.1.S1_at--1012--5671Chr10:16348149..16348173 (25 bp)
GACATTCAGTGATCTTACTCGTGAT
LOC_Os10g31810
Os.17674.1.S1_at--977--2971Chr10:16348180..16348204 (25 bp)
AATGGTGTCAATACATGCCCTGCTT
LOC_Os10g31810
Os.17674.1.S1_at--831--5211Chr10:16348222..16348246 (25 bp)
GAATTATGTGCGCTGAGTCTCAAAT
LOC_Os10g31810
Os.17674.1.S1_at--516--5471Chr10:16348270..16348294 (25 bp)
GAACTACCGTGTATCTTAAGCACAT
LOC_Os10g31810
Os.17674.1.S1_at--128--6751Chr10:16348317..16348341 (25 bp)
GTTCATATGAGTGTTTCTGCAGGAC
LOC_Os10g31810
Os.17674.1.S1_at--450--5211Chr10:16348383..16348407 (25 bp)
GAATTCATGCATCGGCACTTTGTAG
LOC_Os10g31810
Os.17674.1.S1_at--575--6771Chr10:16348444..16348468 (25 bp)
GTTACCATGTTAAGCCTCTATTCTG
LOC_Os10g31810
Target Sequence 
GATAGTCTCCTTACGACACTTAATGATAAGGTCGGTGCTGGCCGGCATTTGTACATTGCAACCAATGAACCCGATAAATC
ATTCTTTGACCCAATGAAGGGTAAGTATCGAACACACTTCCTGGATGACTTCAAGGATTTATGGGATGAGAACAGCGAGT
GGTACACTGAAACAAAGGAGCTGAGCAATGGTAATGCTGTTGAATTCGATGGATACATGAGGGTTGCAGTTGACACTGAG
GTGTTCCTTCGGGGGAAGAGGAAATTGGAGACATTCAGTGATCTTACTCGTGATTGCAAGAATGGTGTCAATACATGCCC
TGCTTCCTCATGAACATCTCGTGAATTATGTGCGCTGAGTCTCAAATGTTGTGCTTGATATAATATTTTTGAACTACCGT
GTATCTTAAGCACATATGGCTTTGTTGTAGCTAGCTAGTTCATATGAGTGTTTCTGCAGGACACTGTTGTTGTATTTTAT
CACCCAGAACACATTAGTTTGTTGAATTCATGCATCGGCACTTTGTAGTTTGTACTAATTGCTTAAACAAGAAATTTGCT
CAATGTTACCATGTTAAGCCTCTATTCTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.17674.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis