Browse Element(s) Details


OsAffx.30629.1.S1_at

Description gb:NM_196820.1
DB_XREF= gi:37534999
TID=OsAffx.30629.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein (OSJNBa0018F16.15), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3184011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g31810Os.17674.1.S1_at11/1110+16346191..16348479expressed protein
LOC_Os10g31820Os.15104.1.S1_s_at11/1110+16357513..16364101glutamine synthetase, putative, expressed
LOC_Os10g31830Os.46898.1.S1_at11/1110+16364171..16368113Ras-related protein Rab-18, putative, expressed
LOC_Os10g31840OsAffx.30629.1.S1_at11/1110+16373378..16373719hypothetical protein
LOC_Os10g31850Os.7339.1.S1_at11/1110+16375561..16379105CHY zinc finger family protein, expressed
LOC_Os10g31850Os.7339.2.S1_at11/1110+16375561..16379105CHY zinc finger family protein, expressed
LOC_Os10g31864OsAffx.20287.1.S1_at11/1110+16380787..16413144expressed protein
LOC_Os10g31864Os.17184.1.S1_at11/1110+16380787..16413144expressed protein
LOC_Os10g31864Os.24870.1.S1_s_at1/1110+16380787..16413144expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30629.1.S1_at--239--1351Chr10:16373637..16373661 (25 bp)
AGAGAAAGGCAGAGATGTGGCACAA
LOC_Os10g31840
OsAffx.30629.1.S1_at--996--6771Chr10:16373571..16373595 (25 bp)
GTTATGGTGAAGTGGTAGCCCTCCC
LOC_Os10g31840
OsAffx.30629.1.S1_at--878--10431Chr10:16373570..16373594 (25 bp)
TTATGGTGAAGTGGTAGCCCTCCCC
LOC_Os10g31840
OsAffx.30629.1.S1_at--341--5291Chr10:16373506..16373530 (25 bp)
GAAGGCACCGACTGGAGCCGTGAAA
LOC_Os10g31840
OsAffx.30629.1.S1_at--813--8211Chr10:16373503..16373527 (25 bp)
GGCACCGACTGGAGCCGTGAAATTC
LOC_Os10g31840
OsAffx.30629.1.S1_at--248--1951Chr10:16373496..16373520 (25 bp)
ACTGGAGCCGTGAAATTCGGCCACA
LOC_Os10g31840
OsAffx.30629.1.S1_at--301--8311Chr10:16373481..16373505 (25 bp)
TTCGGCCACAAAGATGGGTTCCCCT
LOC_Os10g31840
OsAffx.30629.1.S1_at--873--8431Chr10:16373478..16373502 (25 bp)
GGCCACAAAGATGGGTTCCCCTGGA
LOC_Os10g31840
OsAffx.30629.1.S1_at--1021--3271Chr10:16373473..16373497 (25 bp)
CAAAGATGGGTTCCCCTGGAGCGAT
LOC_Os10g31840
OsAffx.30629.1.S1_at--22--811Chr10:16373468..16373492 (25 bp)
ATGGGTTCCCCTGGAGCGATGCCGA
LOC_Os10g31840
OsAffx.30629.1.S1_at--1118--5711Chr10:16373436..16373460 (25 bp)
GACTGCGGACGCCAGCCAGAGGCTG
LOC_Os10g31840
Target Sequence 
AGAGAAAGGCAGAGATGTGGCACAAGGGAGAGGAGAGCCCGACGGCAGCCAGGCAGAGCGGTGGCGGTTATGGTGAAGTG
GTAGCCCTCCCCCTAGCGGCGATGGAGACCGGCACCGGCGCGGTCGCAGGAGAAGGCACCGACTGGAGCCGTGAAATTCG
GCCACAAAGATGGGTTCCCCTGGAGCGATGCCGACGGCCTCGACTGCGGACGCCAGCCAGAGGCTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30629.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis