Browse Element(s) Details


OsAffx.20287.1.S1_at

Description tigr:9638.m02762
TID=OsAffx.20287.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3186411/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g31820Os.15104.1.S1_s_at11/1110+16357513..16364101glutamine synthetase, putative, expressed
LOC_Os10g31830Os.46898.1.S1_at11/1110+16364171..16368113Ras-related protein Rab-18, putative, expressed
LOC_Os10g31840OsAffx.30629.1.S1_at11/1110+16373378..16373719hypothetical protein
LOC_Os10g31850Os.7339.1.S1_at11/1110+16375561..16379105CHY zinc finger family protein, expressed
LOC_Os10g31850Os.7339.2.S1_at11/1110+16375561..16379105CHY zinc finger family protein, expressed
LOC_Os10g31864OsAffx.20287.1.S1_at11/1110+16380787..16413144expressed protein
LOC_Os10g31864Os.17184.1.S1_at11/1110+16380787..16413144expressed protein
LOC_Os10g31864Os.24870.1.S1_s_at1/1110+16380787..16413144expressed protein
LOC_Os10g31880NANA10+16416050..16417447retrotransposon protein, putative, unclassified
LOC_Os10g31890NANA10+16418455..16419662retrotransposon protein, putative, unclassified
LOC_Os10g31900Os.5866.1.S1_at11/1110+16421355..16425794Splicing factor 3B subunit 4, putative, expressed
LOC_Os10g31910OsAffx.18481.1.S1_x_at11/1110+16428726..16431488pectate lyase 12 precursor, putative, expressed
LOC_Os10g31910OsAffx.18481.2.S1_at1/1110+16428726..16431488pectate lyase 12 precursor, putative, expressed
LOC_Os10g31930Os.47356.1.A1_at11/1110+16437453..16439611expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.20287.1.S1_at--533--7511Chr10:16413008..16413032 (25 bp)
GTGGAGGGCCCTCCCGCGATGACGT
LOC_Os10g31864
OsAffx.20287.1.S1_at--909--9151Chr10:16412798..16412822 (25 bp)
TCCGGGTCGTGGAGTTCTACCTGTC
LOC_Os10g31864
OsAffx.20287.1.S1_at--365--7691Chr10:16412795..16412819 (25 bp)
GGGTCGTGGAGTTCTACCTGTCCAG
LOC_Os10g31864
OsAffx.20287.1.S1_at--1061--7191Chr10:16412793..16412817 (25 bp)
GTCGTGGAGTTCTACCTGTCCAGGG
LOC_Os10g31864
OsAffx.20287.1.S1_at--313--9131Chr10:16412759..16412783 (25 bp)
TGCGGCTGCACGAGATCGCGTGCCT
LOC_Os10g31864
OsAffx.20287.1.S1_at--592--8331Chr10:16412756..16412780 (25 bp)
GGCTGCACGAGATCGCGTGCCTCGC
LOC_Os10g31864
OsAffx.20287.1.S1_at--6--4311Chr10:16412610..16412729 (25 bp)
CCTACCTGCTCCGTACAGAATTGGA
LOC_Os10g31864
OsAffx.20287.1.S1_at--738--9971Chr10:16412608..16412727 (25 bp)
TACCTGCTCCGTACAGAATTGGACT
LOC_Os10g31864
OsAffx.20287.1.S1_at--797--4791Chr10:16412603..16412722 (25 bp)
GCTCCGTACAGAATTGGACTCGTCA
LOC_Os10g31864
OsAffx.20287.1.S1_at--324--7031Chr10:16412598..16412622 (25 bp)
GTACAGAATTGGACTCGTCATTCAT
LOC_Os10g31864
OsAffx.20287.1.S1_at--1142--1471Chr10:16412594..16412618 (25 bp)
AGAATTGGACTCGTCATTCATCAAT
LOC_Os10g31864
Target Sequence 
GTGGAGGGCCCTCCCGCGATGACGTCGCCGCGGCGCTCGCCGAGCCGCTGCTCCACCCGCGGTACACCGTCCCCGTCGTC
GGCTGCTTCCTCCCGCTCGCCCCGGCCCTCCTCGACCGCGCCGTCGGGCTGCTCCGCGCCGCGGGGGCAGCCGCCCTGCG
CTCGGACGACCCCGCGGCCCGCGAGGGGGAGGAGGCGGGGGAAGGGGACCTCCGGGTCGTGGAGTTCTACCTGTCCAGGG
GCAGGGGCCTGCGGCTGCACGAGATCGCGTGCCTCGCGCTCGCCCGGGCCCTCGACCTCGCCCCCTACCTGCTCCGTACA
GAATTGGACTCGTCATTCATCAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.20287.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis