Browse Element(s) Details


OsAffx.18481.2.S1_at

Description tigr:9633.m02311
TID=OsAffx.18481.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g319101/11pectate lyase 12 precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g31864OsAffx.20287.1.S1_at11/1110+16380787..16413144expressed protein
LOC_Os10g31864Os.17184.1.S1_at11/1110+16380787..16413144expressed protein
LOC_Os10g31864Os.24870.1.S1_s_at1/1110+16380787..16413144expressed protein
LOC_Os10g31880NANA10+16416050..16417447retrotransposon protein, putative, unclassified
LOC_Os10g31890NANA10+16418455..16419662retrotransposon protein, putative, unclassified
LOC_Os10g31900Os.5866.1.S1_at11/1110+16421355..16425794Splicing factor 3B subunit 4, putative, expressed
LOC_Os10g31910OsAffx.18481.1.S1_x_at11/1110+16428726..16431488pectate lyase 12 precursor, putative, expressed
LOC_Os10g31910OsAffx.18481.2.S1_at1/1110+16428726..16431488pectate lyase 12 precursor, putative, expressed
LOC_Os10g31930Os.47356.1.A1_at11/1110+16437453..16439611expressed protein
LOC_Os10g31940Os.46595.1.S1_a_at9/1110+16439585..16442339Inosine triphosphate pyrophosphatase, putative, expressed
LOC_Os10g31950Os.12690.1.S1_at11/1110+16445999..164502663-ketoacyl-CoA thiolase 2, peroxisomal precursor, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0009814biological_processdefense response to pathogen, incompatible interaction
GO:0042547biological_processcell wall modification during multidimensional cell growth
GO:0031225cellular_componentanchored to membrane
GO:0046658cellular_componentanchored to plasma membrane
GO:0016829molecular_functionlyase activity
GO:0030570molecular_functionpectate lyase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.18481.2.S1_at--199--2611Chr05:14843862..14843886 (25 bp)
AACGCGAATGTGCACGCCTTGCCGA
NONE
OsAffx.18481.2.S1_at--1112--7211Chr05:14843713..14843737 (25 bp)
GTCGACGGCGATCATTGTGTCGAAT
NONE
OsAffx.18481.2.S1_at--794--9591Chr05:14843702..14843726 (25 bp)
TCATTGTGTCGAATAGCTACTTCTC
NONE
OsAffx.18481.2.S1_at--688--6351Chr05:14843569..14843593 (25 bp)
GATGCCACTGTTTGCCGATGTTTGC
NONE
OsAffx.18481.2.S1_at--140--1971Chr05:14843563..14843587 (25 bp)
ACTGTTTGCCGATGTTTGCCATGTT
NONE
OsAffx.18481.2.S1_at--967--3511Chr05:14843544..14843568 (25 bp)
CATGTTCTTGGCTTGTTTGCCGATG
NONE
OsAffx.18481.2.S1_at--1045--8271Chr05:14843535..14843559 (25 bp)
GGCTTGTTTGCCGATGTAGGTAAAT
NONE
OsAffx.18481.2.S1_at--639--351Chr05:14843512..14843536 (25 bp)
ATAAGTGACGCCATTGTTTGCCGTG
NONE
OsAffx.18481.2.S1_at--165--1834Chr04:28276210..28276402 (25 bp)
ACGCCATTGTTTGCCGTGTTCTTGG
NONE
OsAffx.18481.2.S1_at--808--10551Chr05:14843487..14843511 (25 bp)
TTCTTGGCTTGTTTTGCTAGTGAGT
NONE
OsAffx.18481.2.S1_at--1143--8814Chr04:28276463..28276487 (25 bp)
TGTTGGATTGGATTTCGTCTGTTTG
NONE
Target Sequence 
AACGCGAATGTGCACGCCTTGCCGACGCACTACGGGTGGTGCACCCACTCCGACGGCGACGGCATCTCGCTCTACTCGGC
GCGCGACGTGTGGGTGGACCACTGTGCGCTGTCGCGGTGCGCCGACGGGCTCATCGACGCCATCATGGGGTCGACGGCGA
TCATTGTGTCGAATAGCTACTTCTCGCACCACAACGAGGTGATGTTGTTGGGGCACAGCGACGAGTACCTGCCAGACTCG
GCGATGCAGGTGACCATCGCGTTCAACCACTTCGGGATCCAGCTCGTGCAGCGGATGCCACTGTTTGCCGATGTTTGCCA
TGTTCTTGGCTTGTTTGCCGATGTAGGTAAATAAGTGACGCCATTGTTTGCCGTGTTCTTGGCTTGTTTTGCTAGTGAGT
TGTGACAGCAGAAGAGGGGAAAAAATGTTTTTTTTTGTGTGTGTTGGATTGGATTTCGTCTGTTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.18481.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis