Browse Element(s) Details


Os.47356.1.A1_at

Description gb:AK063553.1
DB_XREF= gi:32973571
TID=Os.47356.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.47356 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-117-E05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-117-E05, full insert sequence.
FL= gb:AK063553.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3193011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g31864OsAffx.20287.1.S1_at11/1110+16380787..16413144expressed protein
LOC_Os10g31864Os.17184.1.S1_at11/1110+16380787..16413144expressed protein
LOC_Os10g31864Os.24870.1.S1_s_at1/1110+16380787..16413144expressed protein
LOC_Os10g31880NANA10+16416050..16417447retrotransposon protein, putative, unclassified
LOC_Os10g31890NANA10+16418455..16419662retrotransposon protein, putative, unclassified
LOC_Os10g31900Os.5866.1.S1_at11/1110+16421355..16425794Splicing factor 3B subunit 4, putative, expressed
LOC_Os10g31910OsAffx.18481.1.S1_x_at11/1110+16428726..16431488pectate lyase 12 precursor, putative, expressed
LOC_Os10g31910OsAffx.18481.2.S1_at1/1110+16428726..16431488pectate lyase 12 precursor, putative, expressed
LOC_Os10g31930Os.47356.1.A1_at11/1110+16437453..16439611expressed protein
LOC_Os10g31940Os.46595.1.S1_a_at9/1110+16439585..16442339Inosine triphosphate pyrophosphatase, putative, expressed
LOC_Os10g31950Os.12690.1.S1_at11/1110+16445999..164502663-ketoacyl-CoA thiolase 2, peroxisomal precursor, putative, expressed
LOC_Os10g31970Os.50631.1.S1_at11/1110+16458227..16471497SNF2 domain-containing protein, putative, expressed
LOC_Os10g31970Os.52572.1.S1_at9/1110+16458227..16471497SNF2 domain-containing protein, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.47356.1.A1_at--985--10071Chr10:16438925..16438949 (25 bp)
TAGGACCAGCTGCAACGACGAAACT
LOC_Os10g31930
Os.47356.1.A1_at--508--2391Chr10:16438945..16438969 (25 bp)
AAACTAGCAGCGACACCAAAGGAGA
LOC_Os10g31930
Os.47356.1.A1_at--242--7251Chr10:16439081..16439105 (25 bp)
GTCCATGAGAACACCGGTACCACAG
LOC_Os10g31930
Os.47356.1.A1_at--487--7851Chr10:16439096..16439120 (25 bp)
GGTACCACAGCCGAGCGAGCATAGG
LOC_Os10g31930
Os.47356.1.A1_at--604--7711Chr10:16439294..16439318 (25 bp)
GGTGGCCTCCTACAAGGAGATGCCT
LOC_Os10g31930
Os.47356.1.A1_at--902--6031Chr10:16439310..16439334 (25 bp)
GAGATGCCTGTCAACATTAAGCTCA
LOC_Os10g31930
Os.47356.1.A1_at--584--10471Chr10:16439326..16439350 (25 bp)
TTAAGCTCAGGAGGTCCTAGCCTAG
LOC_Os10g31930
Os.47356.1.A1_at--940--10011Chr10:16439348..16439372 (25 bp)
TAGCATCCTCTCCTAAGGCCAGAAT
LOC_Os10g31930
Os.47356.1.A1_at--938--5891Chr10:16439389..16439413 (25 bp)
GAGCTGCGTGCTGCAATGATTCTTT
LOC_Os10g31930
Os.47356.1.A1_at--964--4331Chr10:16439485..16439509 (25 bp)
CCATGTGTGTATTCTGAGCTGTGAC
LOC_Os10g31930
Os.47356.1.A1_at--997--7351Chr10:16439543..16439567 (25 bp)
GTGAAGAATTGCTCGGGATCTGACC
LOC_Os10g31930
Target Sequence 
TAGGACCAGCTGCAACGACGAAACTAGCAGCGACACCAAAGGAGAAGGAGAATGTGCAGAGAAGGAAGTCCATGAGAACA
CCGGTACCACAGCCGAGCGAGCATAGGGAGGACCTGTTCGAGATCGAGGACCTCCAGCTCGCGATCGGCGGCGGTGGCGG
CGGCGGCGACAGCAAGGCCGGGACCAGTGACCCTCCTGAGCAAGCGNCGNTGGCGGTGGCGNCGGCTCAGTTCCCGCGGA
GGTCGTCGCTGGGGAGGCCGATCAGGAGGGCCACGGAGAGGGTGGCCTCCTACAAGGAGATGCCTGTCAACATTAAGCTC
AGGAGGTCCTAGCCTAGCATCCTCTCCTAAGGCCAGAATGTCTTATAGTCTGATAGAGCTGCGTGCTGCAATGATTCTTT
GCAGTTTAGTTAGTTAGTGTAGCATGTCATTTTGTTTGTNGGAATGGTTGTTGGATTGAATTCTTGATGTACCATGTGTG
TATTCTGAGCTGTGACACATTTATTTACGGTNAAGAGGGGGTGCTGTGTGTGAAGAATTGCTCGGGATCTGACC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.47356.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis